Plant immune system activation is necessary for efficient root colonization by auxin-secreting beneficial bacteria

A complex immune response to flagellin epitope variation in commensal communities

(2021) Nicholas R. Colaianni et al.   Cell Host & Microbe

Plant evolution driven by interactions with symbiotic and pathogenic microbes

(2021) Pierre-Marc Delaux et al.   SCIENCE

Specific modulation of the root immune system by a community of commensal bacteria

(2021) Paulo J. P. L. Teixeira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Co-incidence of Damage and Microbial Patterns Controls Localized Immune Responses in Roots

(2020) Feng Zhou et al.   CELL

Stories of Salicylic Acid: A Plant Defense Hormone

(2020) Pingtao Ding et al.   TRENDS IN PLANT SCIENCE

Dual role of auxin in regulating plant defense and bacterial virulence gene expression during Pseudomonas syringae PtoDC3000 pathogenesis

(2020) Arnaud T. Djami-Tchatchou et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A plant genetic network for preventing dysbiosis in the phyllosphere

(2020) Tao Chen et al.   NATURE

A single bacterial genus maintains root growth in a complex microbiome

(2020) Omri M. Finkel et al.   NATURE

Lateral Root Formation in Arabidopsis: A Well-Ordered LRexit

(2019) Jason Banda et al.   TRENDS IN PLANT SCIENCE

Beyond pathogens: microbiota interactions with the plant immune system

(2019) Paulo José PL Teixeira et al.   CURRENT OPINION IN MICROBIOLOGY

Role of plant respiratory burst oxidase homologs in stress responses

(2018) Wei Wang et al.   FREE RADICAL RESEARCH

Pseudomonas syringae: what it takes to be a pathogen

(2018) Xiu-Fang Xin et al.   NATURE REVIEWS MICROBIOLOGY

Indole-3-acetaldehyde dehydrogenase-dependent auxin synthesis contributes to virulence of Pseudomonas syringae strain DC3000

(2018) Sheri A. McClerklin et al.   PLoS Pathogens

Agrobacterium tumefaciens enhances biosynthesis of two distinct auxins in the formation of crown galls

(2018) Mashiguchi Kiyoshi et al.   PLANT AND CELL PHYSIOLOGY

Bacillus velezensis FZB42 in 2018: The Gram-Positive Model Strain for Plant Growth Promotion and Biocontrol

(2018) Ben Fan et al.   Frontiers in Microbiology

Small RNA profiling reveals important roles for miRNAs in Arabidopsis response to Bacillus velezensis FZB42

(2017) Shanshan Xie et al.   GENE

The roles of auxin during interactions between bacterial plant pathogens and their hosts

(2017) Barbara N Kunkel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Genomic features of bacterial adaptation to plants

(2017) Asaf Levy et al.   NATURE GENETICS

Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists

(2017) Ioannis A. Stringlis et al.   PLANT JOURNAL

Genome-Wide Expression Pattern Analyses of the Arabidopsis Leucine-Rich Repeat Receptor-Like Kinases

(2016) Yunzhe Wu et al.   Molecular Plant

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Cyclic Lipopeptides ofBacillus amyloliquefacienssubsp.plantarumColonizing the Lettuce Rhizosphere Enhance Plant Defense Responses Toward the Bottom Rot PathogenRhizoctonia solani

(2015) Soumitra Paul Chowdhury et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Reporters for sensitive and quantitative measurement of auxin response

(2015) Che-Yang Liao et al.   NATURE METHODS

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Indole-3-acetic acid in plant–microbe interactions

(2014) Daiana Duca et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

The Bifunctional Plant Receptor, OsCERK1, Regulates Both Chitin-Triggered Immunity and Arbuscular Mycorrhizal Symbiosis in Rice

(2014) Kana Miyata et al.   PLANT AND CELL PHYSIOLOGY

bHLH05 Is an Interaction Partner of MYB51 and a Novel Regulator of Glucosinolate Biosynthesis in Arabidopsis

(2014) Henning Frerigmann et al.   PLANT PHYSIOLOGY

Plant pattern-recognition receptors

(2014) Cyril Zipfel   TRENDS IN IMMUNOLOGY

Early steps of double-strand break repair in Bacillus subtilis

(2013) Juan C. Alonso et al.   DNA REPAIR

Phenotypical and molecular responses ofArabidopsis thalianaroots as a result of inoculation with the auxin-producing bacteriumAzospirillum brasilense

(2013) Stijn Spaepen et al.   NEW PHYTOLOGIST

Bacterial Traits Involved in Colonization of Arabidopsis thaliana Roots by Bacillus amyloliquefaciens FZB42

(2013) Kristin Dietel et al.   Plant Pathology Journal

Unraveling Root Developmental Programs Initiated by Beneficial Pseudomonas spp. Bacteria

(2013) C. Zamioudis et al.   PLANT PHYSIOLOGY

Effects of Bacillus amyloliquefaciens FZB42 on Lettuce Growth and Health under Pathogen Pressure and Its Impact on the Rhizosphere Bacterial Community

(2013) Soumitra Paul Chowdhury et al.   PLoS One

Biocontrol of tomato wilt disease byBacillus subtilisisolates from natural environments depends on conserved genes mediating biofilm formation

(2012) Yun Chen et al.   ENVIRONMENTAL MICROBIOLOGY

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Dynamic Expression of the Translational Machinery during Bacillus subtilis Life Cycle at a Single Cell Level

(2012) Alex Rosenberg et al.   PLoS One

Hormone Crosstalk in Plant Disease and Defense: More Than Just JASMONATE-SALICYLATE Antagonism

(2011) Alexandre Robert-Seilaniantz et al.   Annual Review of Phytopathology

Reactive oxygen and oxidative stress tolerance in plant pathogenic Pseudomonas

(2011) Helen Fones et al.   FEMS MICROBIOLOGY LETTERS

Draft Genome Sequence of the Paenibacillus polymyxa Type Strain (ATCC 842T), a Plant Growth-Promoting Bacterium

(2011) H. Jeong et al.   JOURNAL OF BACTERIOLOGY

Efficient colonization of plant roots by the plant growth promoting bacterium Bacillus amyloliquefaciens FZB42, engineered to express green fluorescent protein

(2011) Ben Fan et al.   JOURNAL OF BIOTECHNOLOGY

Iron homeostasis and management of oxidative stress response in bacteria

(2011) Pierre Cornelis et al.   Metallomics

Transcriptome Analysis of the Rhizosphere Bacterium Azospirillum brasilense Reveals an Extensive Auxin Response

(2011) Sandra Van Puyvelde et al.   MICROBIAL ECOLOGY

Evolutionary transitions in bacterial symbiosis

(2011) J. L. Sachs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection

(2011) R. Willmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phosphorylation-Dependent Differential Regulation of Plant Growth, Cell Death, and Innate Immunity by the Regulatory Receptor-Like Kinase BAK1

(2011) Benjamin Schwessinger et al.   PLoS Genetics

Auxin Biosynthesis and Its Role in Plant Development

(2010) Yunde Zhao   Annual Review of Plant Biology

Transcriptional Regulation of ROS Controls Transition from Proliferation to Differentiation in the Root

(2010) Hironaka Tsukagoshi et al.   CELL

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Early molecular events in PAMP-triggered immunity

(2009) Cyril Zipfel   CURRENT OPINION IN PLANT BIOLOGY

Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR

(2009) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA