The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp

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Environmental filtering decreases with fish development for the assembly of gut microbiota

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Pediatric obesity is associated with an altered gut microbiota and discordant shifts inFirmicutespopulations

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Dietary administration of saponin stimulates growth of the swimming crab Portunus trituberculatus and enhances its resistance against Vibrio alginolyticus infection

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Phylogenetic network analysis applied to pig gut microbiota identifies an ecosystem structure linked with growth traits

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Interaction between gut microbiota and toll-like receptor: from immunity to metabolism

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Contrasting Ecological Processes and Functional Compositions Between Intestinal Bacterial Community in Healthy and Diseased Shrimp

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Gut bacterial diversity of farmed sea cucumbers Apostichopus japonicus with different growth rates

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Microbiome-wide association studies link dynamic microbial consortia to disease

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Gut Microbiota Diversity and Human Diseases: Should We Reintroduce Key Predators in Our Ecosystem?

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Historical Contingency in Community Assembly: Integrating Niches, Species Pools, and Priority Effects

(2015) Tadashi Fukami   Annual Review of Ecology Evolution and Systematics

Changes in intestinal bacterial communities are closely associated with shrimp disease severity

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Temperature sensitivity of soil bacterial community along contrasting warming gradient

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Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

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Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Microbial Invasions: The Process, Patterns, and Mechanisms

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Microbes don't play solitaire: how cooperation trumps isolation in the microbial world

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Evidence of bacterioplankton community adaptation in response to long-term mariculture disturbance

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The application of bacterial indicator phylotypes to predict shrimp health status

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Quantifying community assembly processes and identifying features that impose them

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

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The gut microbiota — masters of host development and physiology

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Higher Prevalence and Abundance of Bdellovibrio bacteriovorus in the Human Gut of Healthy Subjects

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Molecular ecological network analyses

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Defining a Healthy Human Gut Microbiome: Current Concepts, Future Directions, and Clinical Applications

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Gut Microbiota Composition and Activity in Relation to Host Metabolic Phenotype and Disease Risk

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Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

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Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

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Diversity, stability and resilience of the human gut microbiota

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Microbial interactions: from networks to models

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Inter-individual variation in the dominant intestinal microbiota of reared Atlantic cod (Gadus morhuaL.) larvae

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UCHIME improves sensitivity and speed of chimera detection

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FLASH: fast length adjustment of short reads to improve genome assemblies

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Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

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Intraspecific genotypic richness and relatedness predict the invasibility of microbial communities

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Correlation Network Analysis Applied to Complex Biofilm Communities

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Genotype networks shed light on evolutionary constraints

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Using null models to disentangle variation in community dissimilarity from variation in α-diversity

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Picante: R tools for integrating phylogenies and ecology

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Search and clustering orders of magnitude faster than BLAST

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Opposing effects of competitive exclusion on the phylogenetic structure of communities

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Niche conservatism as an emerging principle in ecology and conservation biology

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QIIME allows analysis of high-throughput community sequencing data

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Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

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Spite and virulence in the bacterium Pseudomonas aeruginosa

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A core gut microbiome in obese and lean twins

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