Tracking the fecal mycobiome through the lifespan of production pigs and a comparison to the feral pig

Persisting Cryptococcus yeast species Vishniacozyma victoriae and Cryptococcus neoformans elicit unique airway inflammation in mice following repeated exposure

(2023) Rachael E. Rush et al.   Frontiers in Cellular and Infection Microbiology

Unregulated Online Sales are High-Risk Sources of Domestic Swine (Sus scrofa) in Canada: Implications for Invasive Wild Pig and African Swine Fever Risk Preparedness

(2023) Amanda M. MacDonald et al.   JOURNAL OF WILDLIFE DISEASES

Exploring the Possible Link between the Gut Microbiome and Fat Deposition in Pigs

(2022) Guangmin Zhao et al.   Oxidative Medicine and Cellular Longevity

Multiple sclerosis patients have an altered gut mycobiome and increased fungal to bacterial richness

(2022) Meeta Yadav et al.   PLoS One

Lactobacillus rhamnosus colonisation antagonizes Candida albicans by forcing metabolic adaptations that compromise pathogenicity

(2022) Raquel Alonso-Roman et al.   Nature Communications

Stability and volatility shape the gut bacteriome and Kazachstania slooffiae dynamics in preweaning, nursery and adult pigs

(2022) Brandi Feehan et al.   Scientific Reports

Maternal Mycobiome, but Not Antibiotics, Alters Fungal Community Structure in Neonatal Piglets

(2022) Tausha L. Prisnee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Germination dynamics of allergenic fungal spores in respiratory mucus

(2021) Wan-Rou Lin et al.   AEROBIOLOGIA

Isolation and identification of Candida tropicalis in sows with fatal infection: a case report

(2021) Lufeng Zhai et al.   BMC Veterinary Research

Intestinal Health of Pigs Upon Weaning: Challenges and Nutritional Intervention

(2021) Lan Zheng et al.   Frontiers in Veterinary Science

Characterization of Kazachstania slooffiae, a Proposed Commensal in the Porcine Gut

(2021) Katie Lynn Summers et al.   Journal of Fungi

The fecal microbiota of piglets during weaning transition and its association with piglet growth across various farm environments

(2021) Diana Luise et al.   PLoS One

Characterization of fungal microbial diversity in healthy and diarrheal Tibetan piglets

(2021) Qinghui Kong et al.   BMC MICROBIOLOGY

Timing and extent of crop damage by wild pigs (Sus scrofa Linnaeus) to corn and peanut fields

(2020) C.M. Boyce et al.   CROP PROTECTION

Intestinal fungi are causally implicated in microbiome assembly and immune development in mice

(2020) Erik van Tilburg Bernardes et al.   Nature Communications

The gut, the bad and the harmless: Candida albicans as a commensal and opportunistic pathogen in the intestine

(2020) Carol A Kumamoto et al.   CURRENT OPINION IN MICROBIOLOGY

Temporal Dynamics of the Gut Bacteriome and Mycobiome in the Weanling Pig

(2020) Ann M. Arfken et al.   Microorganisms

Gut mycobiome: A promising target for colorectal cancer

(2020) Xiali Qin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER

The Fungal Microbiome and Asthma

(2020) Erik van Tilburg Bernardes et al.   Frontiers in Cellular and Infection Microbiology

The Piglet Mycobiome During the Weaning Transition: A Pilot Study

(2019) Katie L Summers et al.   JOURNAL OF ANIMAL SCIENCE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Evaluating Cost-Effective Methods for Rapid and Repeatable National Scale Detection and Mapping of Invasive Species Spread

(2019) Ruth A. Aschim et al.   Scientific Reports

Antibiotic-induced gut metabolome and microbiome alterations increase the susceptibility to Candida albicans colonization in the gastrointestinal tract

(2019) Daniel Gutierrez et al.   FEMS MICROBIOLOGY ECOLOGY

Exploring possible associations of the intestine bacterial microbiome with the pre-weaned weight gaining performance of piglets in intensive pig production

(2019) Xinghua Ding et al.   Scientific Reports

Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract

(2019) Ann M. Arfken et al.   Frontiers in Microbiology

The fungal community and its interaction with the concentration of short‐chain fatty acids in the faeces of Chenghua, Yorkshire and Tibetan pigs

(2019) Jiayan Li et al.   Microbial Biotechnology

Co-occurrence of early gut colonization in neonatal piglets with microbiota in the maternal and surrounding delivery environments

(2018) Xue Chen et al.   ANAEROBE

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Invasive candidiasis

(2018) Peter G. Pappas et al.   Nature Reviews Disease Primers

Development of the Human Mycobiome over the First Month of Life and across Body Sites

(2018) Tonya L. Ward et al.   mSystems

Porcine intestinal yeast species, Kazachstania slooffiae , a new potential protein source with favourable amino acid composition for animals

(2017) V. Urubschurov et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Spatiotemporal trends in Canadian domestic wild boar production and habitat predict wild pig distribution

(2017) Nicole L. Michel et al.   LANDSCAPE AND URBAN PLANNING

Gut Microbiota Dysbiosis in Postweaning Piglets: Understanding the Keys to Health

(2017) Raphaële Gresse et al.   TRENDS IN MICROBIOLOGY

The gut mycobiome of the Human Microbiome Project healthy cohort

(2017) Andrea K. Nash et al.   Microbiome

The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway

(2017) Carlos García et al.   mSphere

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Feral wild boar distribution and perceptions of risk on the central Canadian prairies

(2014) Ryan K. Brook et al.   WILDLIFE SOCIETY BULLETIN

Genetic susceptibility toCandidainfections

(2013) Sanne P. Smeekens et al.   EMBO Molecular Medicine

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Impact of wild boar (Sus scrofa) in its introduced and native range: a review

(2012) M. Noelia Barrios-Garcia et al.   BIOLOGICAL INVASIONS

The Mycobiome: Influencing IBD Severity

(2012) David L. Moyes et al.   Cell Host & Microbe

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Dietary L-Tryptophan Supplementation with Reduced Large Neutral Amino Acids Enhances Feed Efficiency and Decreases Stress Hormone Secretion in Nursery Pigs under Social-Mixing Stress

(2012) Yan Bin Shen et al.   JOURNAL OF NUTRITION

Establishment of intestinal microbiota with focus on yeasts of unweaned and weaned piglets kept under different farm conditions

(2011) Vladimir Urubschurov et al.   FEMS MICROBIOLOGY ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota)

(2010) József Geml et al.   NEW PHYTOLOGIST

Biological diversity of yeasts in the gastrointestinal tract of weaned piglets kept under different farm conditions

(2009) Vladimir Urubschurov et al.   FEMS YEAST RESEARCH