Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract

Microbial Species and Biodiversity in Settling Dust within and between Pig Farms

(2019) John Kerr White et al.   ENVIRONMENTAL RESEARCH

Piglet gut microbial shifts early in life: causes and effects

(2019) Robin B. Guevarra et al.   Journal of Animal Science and Biotechnology

Dynamics of Human Gut Microbiota and Short-Chain Fatty Acids in Response to Dietary Interventions with Three Fermentable Fibers

(2019) Nielson T. Baxter et al.   mBio

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

(2019) Mathias L. Richard et al.   Nature Reviews Gastroenterology & Hepatology

The Piglet Mycobiome During the Weaning Transition: A Pilot Study

(2019) Katie L Summers et al.   JOURNAL OF ANIMAL SCIENCE

The role of inflammation and the gut microbiome in depression and anxiety

(2019) Jason M. Peirce et al.   JOURNAL OF NEUROSCIENCE RESEARCH

Gut Mycobiota in Immunity and Inflammatory Disease

(2019) Xin V. Li et al.   IMMUNITY

Longitudinal Survey of Fungi in the Human Gut: ITS Profiling, Phenotyping, and Colonization

(2019) Stefano Raimondi et al.   Frontiers in Microbiology

Pathogenic Fungal Infection in the Lung

(2019) Zhi Li et al.   Frontiers in Immunology

Fungal-Bacterial Interactions in Health and Disease

(2019) Wibke Krüger et al.   Pathogens

Antifungal activity of clinical Lactobacillus strains against Candida albicans biofilms: identification of potential probiotic candidates to prevent oral candidiasis

(2018) Rodnei Dennis Rossoni et al.   BIOFOULING

Species Level Description of the Human Ileal Bacterial Microbiota

(2018) Heidi Cecilie Villmones et al.   Scientific Reports

Novel transgenic pigs with enhanced growth and reduced environmental impact

(2018) Xianwei Zhang et al.   eLife

Aspergillus fumigatus Inhibits Pseudomonas aeruginosa in Co-culture: Implications of a Mutually Antagonistic Relationship on Virulence and Inflammation in the CF Airway

(2018) Emma Reece et al.   Frontiers in Microbiology

The dynamics of the piglet gut microbiome during the weaning transition in association with health and nutrition

(2018) Robin B. Guevarra et al.   Journal of Animal Science and Biotechnology

Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions

(2018) Daniel Crespo-Piazuelo et al.   Scientific Reports

Experimental evolution of a fungal pathogen into a gut symbiont

(2018) Gloria Hoi Wan Tso et al.   SCIENCE

Interactions of Aspergillus fumigatus and Stenotrophomonas maltophilia in an in vitro Mixed Biofilm Model: Does the Strain Matter?

(2018) Elise Melloul et al.   Frontiers in Microbiology

Composition and diversity of mucosa-associated microbiota along the entire length of the pig gastrointestinal tract; dietary influences

(2017) Jennifer Kelly et al.   ENVIRONMENTAL MICROBIOLOGY

The Fungal Mycobiome and Its Interaction with Gut Bacteria in the Host

(2017) Qi Sam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Environmental pH modulation by pathogenic fungi as a strategy to conquer the host

(2017) Slavena Vylkova   PLoS Pathogens

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

(2017) David W. Waite et al.   Frontiers in Microbiology

The gut mycobiome of the Human Microbiome Project healthy cohort

(2017) Andrea K. Nash et al.   Microbiome

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Interplay between Lactobacillus rhamnosus GG and Candida and the involvement of exopolysaccharides

(2017) Camille N. Allonsius et al.   Microbial Biotechnology

Age, introduction of solid feed and weaning are more important determinants of gut bacterial succession in piglets than breed and nursing mother as revealed by a reciprocal cross-fostering model

(2016) Gaorui Bian et al.   ENVIRONMENTAL MICROBIOLOGY

CARD9 impacts colitis by altering gut microbiota metabolism of tryptophan into aryl hydrocarbon receptor ligands

(2016) Bruno Lamas et al.   NATURE MEDICINE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Retrospective Analysis of Bacterial and Viral Co-Infections in Pneumocystis spp. Positive Lung Samples of Austrian Pigs with Pneumonia

(2016) Christiane Weissenbacher-Lang et al.   PLoS One

Association between Pneumocystis spp. and co-infections with Bordetella bronchiseptica , Mycoplasma hyopneumoniae and Pasteurella multocida in Austrian pigs with pneumonia

(2016) B. Kureljušić et al.   VETERINARY JOURNAL

Fungi in the healthy human gastrointestinal tract

(2016) Heather E. Hallen-Adams et al.   Virulence

Antifungal Activity of Lactic Acid Bacteria Strains Isolated from Natural Honey against Pathogenic Candida Species

(2016) Bulgasem Y. Bulgasem et al.   MYCOBIOLOGY

Biogeography of the Intestinal Mucosal and Lumenal Microbiome in the Rhesus Macaque

(2015) Koji Yasuda et al.   Cell Host & Microbe

Development and Evaluation of qPCR Assay for Quantitation of Kazachstania slooffiae and Total Yeasts Occurring in the Porcine Gut

(2015) Vladimir Urubschurov et al.   CURRENT MICROBIOLOGY

Validation of a predictive model for the growth of chalk yeasts on bread

(2015) Anaïs Burgain et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The human gut mycobiome: pitfalls and potentials--a mycologists perspective

(2015) M. J. Suhr et al.   MYCOLOGIA

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Obesity changes the human gut mycobiome

(2015) M. Mar Rodríguez et al.   Scientific Reports

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Gut Dysbiosis Promotes M2 Macrophage Polarization and Allergic Airway Inflammation via Fungi-Induced PGE2

(2014) Yun-Gi Kim et al.   Cell Host & Microbe

Mycobiota in gastrointestinal diseases

(2014) Pranab K. Mukherjee et al.   Nature Reviews Gastroenterology & Hepatology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic activity and symbiotic interactions of lactic acid bacteria and yeasts isolated from water kefir

(2013) Jasmin Stadie et al.   FOOD MICROBIOLOGY

Tryptophan Catabolites from Microbiota Engage Aryl Hydrocarbon Receptor and Balance Mucosal Reactivity via Interleukin-22

(2013) Teresa Zelante et al.   IMMUNITY

Dysbiosis of Gut Fungal Microbiota is Associated With Mucosal Inflammation in Crohn’s Disease

(2013) Qiurong Li et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans

(2013) John R. Erb Downward et al.   Scientific Reports

The biological stress of early weaned piglets

(2013) Joy M Campbell et al.   Journal of Animal Science and Biotechnology

Inclusion of Chicory (Cichorium intybus L.) in Pigs' Diets Affects the Intestinal Microenvironment and the Gut Microbiota

(2012) Haoyu Liu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Candida albicans and Bacterial Microbiota Interactions in the Cecum during Recolonization following Broad-Spectrum Antibiotic Therapy

(2012) Katie L. Mason et al.   INFECTION AND IMMUNITY

Occupational Exposure to Aspergillus by Swine and Poultry Farm Workers in Portugal

(2012) R. Sabino et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART A-CURRENT ISSUES

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Establishment of intestinal microbiota with focus on yeasts of unweaned and weaned piglets kept under different farm conditions

(2011) Vladimir Urubschurov et al.   FEMS MICROBIOLOGY ECOLOGY

Interplay between the Gastric Bacterial Microbiota and Candida albicans during Postantibiotic Recolonization and Gastritis

(2011) Katie L. Mason et al.   INFECTION AND IMMUNITY

Sodium butyrate inhibits pathogenic yeast growth and enhances the functions of macrophages

(2011) L. N. Nguyen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bacterial-Fungal Interactions: Hyphens between Agricultural, Clinical, Environmental, and Food Microbiologists

(2011) P. Frey-Klett et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Natural Aryl Hydrocarbon Receptor Ligands Control Organogenesis of Intestinal Lymphoid Follicles

(2011) E. A. Kiss et al.   SCIENCE

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus

(2010) Cletus P. Kurtzman   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Assessment of gastrointestinal pH, fluid and lymphoid tissue in the guinea pig, rabbit and pig, and implications for their use in drug development

(2010) Hamid A. Merchant et al.   EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans

(2009) V. Schroeckh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY