The Human Gut Microbial Metabolome Modulates Fungal Growth via the TOR Signaling Pathway

The Fungal Mycobiome and Its Interaction with Gut Bacteria in the Host

(2017) Qi Sam et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Fungal microbiota dysbiosis in IBD

(2016) Harry Sokol et al.   GUT

Bacteriome and Mycobiome Interactions Underscore Microbial Dysbiosis in Familial Crohn’s Disease

(2016) G. Hoarau et al.   mBio

Chemical communication in the gut: Effects of microbiota-generated metabolites on gastrointestinal bacterial pathogens

(2015) Stefanie L. Vogt et al.   ANAEROBE

Fungal Signature in the Gut Microbiota of Pediatric Patients With Inflammatory Bowel Disease

(2015) Christel Chehoud et al.   INFLAMMATORY BOWEL DISEASES

Fungal Dysbiosis in Mucosa-associated Microbiota of Crohn’s Disease Patients

(2015) Giuseppina Liguori et al.   Journal of Crohns & Colitis

Metabolomic Analysis of Human Fecal Microbiota: A Comparison of Feces-Derived Communities and Defined Mixed Communities

(2015) Sandi Yen et al.   JOURNAL OF PROTEOME RESEARCH

Ribosomal protein S6 phosphorylation is controlled by TOR and modulated by PKA inCandida albicans

(2015) Tahmeena Chowdhury et al.   MOLECULAR MICROBIOLOGY

The human gut mycobiome: pitfalls and potentials--a mycologists perspective

(2015) M. J. Suhr et al.   MYCOLOGIA

Activation of HIF-1α and LL-37 by commensal bacteria inhibits Candida albicans colonization

(2015) Di Fan et al.   NATURE MEDICINE

Administration of defined microbiota is protective in a murine Salmonella infection model

(2015) Sarah-Lynn E. Martz et al.   Scientific Reports

Specialized Metabolites from the Microbiome in Health and Disease

(2014) Gil Sharon et al.   Cell Metabolism

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

(2014) Johan Larsbrink et al.   NATURE

Regulatory Networks Controlling Nitrogen Sensing and Uptake in Candida albicans

(2014) Shruthi Ramachandra et al.   PLoS One

Antivirulence Activity of the Human Gut Metabolome

(2014) L. C. M. Antunes et al.   mBio

Evaluation of microbial community reproducibility, stability and composition in a human distal gut chemostat model

(2013) Julie A.K. McDonald et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

Commensal bacteria at the interface of host metabolism and the immune system

(2013) Jonathan R Brestoff et al.   NATURE IMMUNOLOGY

The human mycobiome in health and disease

(2013) Lijia Cui et al.   Genome Medicine

Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut

(2013) Elaine O Petrof et al.   Microbiome

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Effect of Antibiotic Treatment on the Intestinal Metabolome

(2011) L. Caetano M. Antunes et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Target of Rapamycin (TOR) in Nutrient Signaling and Growth Control

(2011) Robbie Loewith et al.   GENETICS

Nitrogen regulation of morphogenesis and protease secretion in Candida albicans

(2011) Joachim Morschhäuser   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Sodium butyrate inhibits pathogenic yeast growth and enhances the functions of macrophages

(2011) L. N. Nguyen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Candida albicans Interactions with Bacteria in the Context of Human Health and Disease

(2010) Diana K. Morales et al.   PLoS Pathogens

Candida albicans Colonization and ASCA in Familial Crohn's Disease

(2009) Annie Standaert-Vitse et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Candida colonisation as a source for candidaemia

(2009) L.N. Miranda et al.   JOURNAL OF HOSPITAL INFECTION

Glucose Promotes Stress Resistance in the Fungal Pathogen Candida albicans

(2009) Alexandra Rodaki et al.   MOLECULAR BIOLOGY OF THE CELL

The Protein Kinase Tor1 Regulates Adhesin Gene Expression in Candida albicans

(2009) Robert J. Bastidas et al.   PLoS Pathogens

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY