Mechanisms Underlying the Pathogenic and Endophytic Lifestyles in Diaporthe: An Omics-Based Approach

The impact of two Diaporthe species on Vaccinium corymbosum physiological performance under different water availability scenarios

(2023) Sandra Hilário et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Uniting the Role of Endophytic Fungi against Plant Pathogens and Their Interaction

(2023) Shazia Akram et al.   Journal of Fungi

Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies

(2022) Yansu Wang et al.   BMC GENOMICS

Susceptibility of almond (Prunus dulcis) cultivars to twig canker and shoot blight caused by Diaporthe amygdali

(2022) Francisco Beluzán et al.   PLANT DISEASE

An Overview of the Mechanisms Involved in Coffee-Hemileia vastatrix Interactions: Plant and Pathogen Perspectives

(2022) Maria do Céu Silva et al.   Agronomy-Basel

Biocontrol Potential and Catabolic Profile of Endophytic Diaporthe eres Strain 1420S from Prunus domestica L. in Poland—A Preliminary Study

(2022) Barbara Abramczyk et al.   Agronomy-Basel

Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus

(2022) Eilyn Mena et al.   BMC GENOMICS

Determinants of endophytic and pathogenic lifestyle in root colonizing fungi

(2022) Amey Redkar et al.   CURRENT OPINION IN PLANT BIOLOGY

The numbers of fungi: are the most speciose genera truly diverse?

(2022) Chitrabhanu S. Bhunjun et al.   FUNGAL DIVERSITY

Human peripheral blood mononuclear cells: A review of recent proteomic applications

(2022) Michal Alexovič et al.   PROTEOMICS

Dual RNA Sequencing Reveals the Genome-Wide Expression Profiles During the Compatible and Incompatible Interactions Between Solanum tuberosum and Phytophthora infestans

(2022) Honghao Li et al.   Frontiers in Plant Science

Genome Analyses of Two Blueberry Pathogens: Diaportheamygdali CAA958 and Diaporthe eres CBS 160.32

(2022) Sandra Hilário et al.   Journal of Fungi

Endophytic Diaporthe Associated with Morinda officinalis in China

(2022) Mei Luo et al.   Journal of Fungi

Metabolomics and Chemoinformatics in Agricultural Biotechnology Research: Complementary Probes in Unravelling New Metabolites for Crop Improvement

(2022) Manamele Dannies Mashabela et al.   Biology-Basel

Fungal endophytes in plants and their relationship to plant disease

(2022) David B Collinge et al.   CURRENT OPINION IN MICROBIOLOGY

Whole-Genome Sequence Data for the Holotype Strain of Diaporthe ilicicola, a Fungus Associated with Latent Fruit Rot in Deciduous Holly

(2022) Isabel B. Emanuel et al.   Microbiology Resource Announcements

The Resistance of Narrow-Leafed Lupin to Diaporthe toxica Is Based on the Rapid Activation of Defense Response Genes

(2021) Michał Książkiewicz et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comprehensive Review of Transcriptomics (RNAs) Workflows from Blood Specimens

(2021) Abbas Ali Husseini et al.   SEPARATION AND PURIFICATION REVIEWS

Recent Advances in Molecular Diagnostics of Fungal Plant Pathogens: A Mini Review

(2021) Ganeshamoorthy Hariharan et al.   Frontiers in Cellular and Infection Microbiology

Bioactive Secondary Metabolites of the Genus Diaporthe and Anamorph Phomopsis from Terrestrial and Marine Habitats and Endophytes: 2010–2019

(2021) Tang-Chang Xu et al.   Microorganisms

Morphology Characterization, Molecular Phylogeny, and Pathogenicity of Diaporthe passifloricola on Citrus reticulata cv. Nanfengmiju in Jiangxi Province, China

(2021) Chingchai Chaisiri et al.   Plants-Basel

Occurrence of Diaporthe species in Eucalyptus globulus , Pinus pinaster and Quercus suber in Portugal

(2021) Ana Filipa Lopes et al.   FOREST PATHOLOGY

Diaporthe amygdali, a species complex or a complex species?

(2021) Sandra Hilário et al.   Fungal Biology

Molecular Identification of Endophytic Bacteria in Leucojum aestivum In Vitro Culture, NMR-Based Metabolomics Study and LC-MS Analysis Leading to Potential Amaryllidaceae Alkaloid Production

(2021) Rosella Spina et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Drought and Pathogen Effects on Survival, Leaf Physiology, Oxidative Damage, and Defense in Two Middle Eastern Oak Species

(2021) Ehsan Ghanbary et al.   Forests

Endophytic Diaporthe Associated With Citrus grandis cv. Tomentosa in China

(2021) Zhangyong Dong et al.   Frontiers in Microbiology

Phylogenetic and Haplotype Network Analyses of Diaporthe eres Species in China Based on Sequences of Multiple Loci

(2021) Chingchai Chaisiri et al.   Biology-Basel

An Ecological Insight into the Multifaceted World of Plant-Endophyte Association

(2021) Sushma Mishra et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge

(2021) Cristina Zamora-Ballesteros et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Whole-genome sequence of Diaporthe citri isolate NFHF-8-4, the causal agent of citrus melanose

(2021) Xiang-Yu Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

High-Quality Genome Resource of Diaporthe destruens Causing Foot Rot Disease of Sweet Potato

(2021) LiFei Huang et al.   PLANT DISEASE

Phylogenomics of Plant-Associated Botryosphaeriaceae Species

(2021) Jadran F. Garcia et al.   Frontiers in Microbiology

Characterization of Diaporthe species associated with peach constriction canker, with two novel species from China

(2021) Xianhong Wang et al.   MycoKeys

Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

(2021) Jan H. Nagel et al.   BMC GENOMICS

Changes in Photosynthesis Could Provide Important Insight into the Interaction between Wheat and Fungal Pathogens

(2021) Huai Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Establishment of a quadruplex real-time PCR assay to distinguish the fungal pathogens Diaporthe longicolla, D. caulivora, D. eres, and D. novem on soybean

(2021) Behnoush Hosseini et al.   PLoS One

Real-Time PCR Assay for the Diagnosis and Quantification of Co-infections by Diaporthe batatas and Diaporthe destruens in Sweet Potato

(2021) Kazuki Fujiwara et al.   Frontiers in Plant Science

Targeting Ascomycota genomes: what and how big?

(2021) Rowena Hill et al.   Fungal Biology Reviews

Molecular Phylogenetic Diversity and Biological Characterization of Diaporthe Species Associated with Leaf Spots of Camellia sinensis in Taiwan

(2021) Hiran A. Ariyawansa et al.   Plants-Basel

Using Genealogical Concordance and Coalescent-Based Species Delimitation to Assess Species Boundaries in the Diaporthe eres Complex

(2021) Sandra Hilário et al.   Journal of Fungi

A Critical Review on Communication Mechanism within Plant-Endophytic Fungi Interactions to Cope with Biotic and Abiotic Stresses

(2021) Hongyun Lu et al.   Journal of Fungi

Using structural variants to understand the ecological and evolutionary dynamics of fungal plant pathogens

(2021) Fanny E. Hartmann   NEW PHYTOLOGIST

Draft Genome Sequence of Diaporthe batatatis Causing Dry Rot Disease in Sweetpotato

(2021) Yiling Yang et al.   PLANT DISEASE

Number of Candidate Effector Genes in Accessory Genomes Differentiates Pathogenic From Endophytic Fusarium oxysporum Strains

(2021) Maria E. Constantin et al.   Frontiers in Plant Science

Two new species of Diaporthe (Diaporthaceae, Diaporthales) associated with tree cankers in the Netherlands

(2021) Ning Jiang et al.   MycoKeys

Disease Severity, Resistance Analysis, and Expression Profiling of Pathogenesis-Related Protein Genes after the Inoculation of Fusarium equiseti in Wheat

(2021) Hakim Manghwar et al.   Agronomy-Basel

Diversity and Pathogenicity of Diaporthe Species Revealed from a Survey of Blueberry Orchards in Portugal

(2021) Sandra Hilário et al.   Agriculture-Basel

Diaporthe species associated with twig blight and dieback of Vaccinium corymbosum in Portugal, with description of four new species

(2020) Sandra Hilário et al.   MYCOLOGIA

Whole-genome and time-course dual RNA-Seq analyses reveal chronic pathogenicity-related gene dynamics in the ginseng rusty root rot pathogen Ilyonectria robusta

(2020) Yiming Guan et al.   Scientific Reports

Soybean Stem Canker Caused by Diaporthe caulivora; Pathogen Diversity, Colonization Process, and Plant Defense Activation

(2020) Eilyn Mena et al.   Frontiers in Plant Science

Whole genome sequence of Diaporthe capsici, a new pathogen of walnut blight

(2020) Xinmei Fang et al.   GENOMICS

Prediction of the secretomes of endophytic and nonendophytic fungi reveals similarities in host plant infection and colonization strategies

(2020) Casley Borges de Queiroz et al.   MYCOLOGIA

Identification and Characterization of Diaporthe spp. Associated with Twig Cankers and Shoot Blight of Almonds in Spain

(2020) Maela León et al.   Agronomy-Basel

An exploration on the toxicity mechanisms of phytotoxins and their potential utilities

(2020) Huiling Chen et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

High-Quality Genome Resource of the Pathogen of Diaporthe (Phomopsis) phragmitis Causing Kiwifruit Soft Rot

(2020) Pu Liu et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A multi-omics approach to solving problems in plant disease ecology

(2020) Sharifa G. Crandall et al.   PLoS One

Fun(gi)omics: Advanced and Diverse Technologies to Explore Emerging Fungal Pathogens and Define Mechanisms of Antifungal Resistance

(2020) B. Ball et al.   mBio

Diaporthe rosiphthora sp. nov.: Yet another rose dieback fungus

(2020) Pereira Caio et al.   CROP PROTECTION

High diversity of Diaporthe species associated with pear shoot canker in China

(2020) Y.S. Guo et al.   PERSOONIA

The Genome Sequence of the Citrus Melanose Pathogen Diaporthe citri and Two Citrus related Diaporthe species

(2020) Yunpeng Gai et al.   PHYTOPATHOLOGY

Molecular Characterization of Diaporthe Species Associated With Hazelnut Defects

(2020) Roberta Arciuolo et al.   Frontiers in Plant Science

Genome-Wide Signatures of Selection in Colletotrichum kahawae Reveal Candidate Genes Potentially Involved in Pathogenicity and Aggressiveness

(2019) Ana Vieira et al.   Frontiers in Microbiology

Diaporthe eres causes stem cankers and death of young apple rootstocks in Canada

(2019) Shawkat Ali et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Metabolomic Profiling of the Host Response of Tomato (Solanum lycopersicum) Following Infection by Ralstonia solanacearum

(2019) Dylan R. Zeiss et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative proteomic analysis of plant-pathogen interactions in resistant and susceptible poplar ecotypes infected with Botryosphaeria dothidea

(2019) Yong Xia Li et al.   PHYTOPATHOLOGY

High Genetic Diversity and Species Complexity of Diaporthe Associated With Grapevine Dieback in China

(2019) Ishara S. Manawasinghe et al.   Frontiers in Microbiology

Quantitative Polymerase Chain Reaction Assays developed for Diaporthe helianthi and D. gulyae for Phomopsis Stem Canker Diagnosis and Germplasm Screening in Sunflower (Helianthus annuus)

(2019) Taylor Elverson et al.   PLANT DISEASE

Identity and pathogenicity of some fungi associated with hazelnut (Corylus avellana L.) trunk cankers in Oregon

(2019) Nik G. Wiman et al.   PLoS One

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

(2019) Carina Félix et al.   Scientific Reports

Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions

(2019) Micael Gonçalves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii ) of blueberries and cranberries in the EU

(2018) A.H.C. van Bruggen et al.   ANNALS OF APPLIED BIOLOGY

Diversity of fungal latent pathogens and true endophytes associated with fruit trees in Uruguay

(2018) Lucía Sessa et al.   JOURNAL OF PHYTOPATHOLOGY

Endophytism or saprophytism: Decoding the lifestyle transition of the generalist fungus Phomopsis liquidambari

(2018) Jun Zhou et al.   MICROBIOLOGICAL RESEARCH

Diaporthe from walnut tree (Juglans regia) in China, with insight of the Diaporthe eres complex

(2018) XinLei Fan et al.   MYCOLOGICAL PROGRESS

Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe

(2018) V. Guarnaccia et al.   PERSOONIA

First Report of Diaporthe amygdali Causing Walnut Twig Canker in Shandong Province of China

(2018) Lulu Meng et al.   PLANT DISEASE

First Reports of Diaporthe kongii, D. masirevicii, and D. ueckerae Associated with Stem and Peg Dieback on Peanut in Australia

(2018) S. M. Thompson et al.   PLANT DISEASE

Integrating transcriptomic techniques and k-means clustering in metabolomics to identify markers of abiotic and biotic stress in Medicago truncatula

(2018) Elizabeth Dickinson et al.   Metabolomics

High diversity of Diaporthe species associated with dieback diseases in China, with twelve new species described

(2018) Qin Yang et al.   MycoKeys

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System

(2018) Huan Qi et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Spatial and temporal variation of fungal endophytic richness and diversity associated to the phyllosphere of olive cultivars

(2018) Patrick Materatski et al.   Fungal Biology

Fungal secondary metabolism: regulation, function and drug discovery

(2018) Nancy P. Keller   NATURE REVIEWS MICROBIOLOGY

From pathogen to endophyte: an endophytic population of Verticillium dahliae evolved from a sympatric pathogenic population

(2018) David Linnard Wheeler et al.   NEW PHYTOLOGIST

Genera of phytopathogenic fungi: GOPHY 2

(2018) Y. Marin-Felix et al.   STUDIES IN MYCOLOGY

Fungal Identification Using Molecular Tools: A Primer for the Natural Products Research Community

(2017) Huzefa A. Raja et al.   JOURNAL OF NATURAL PRODUCTS

The genus Diaporthe: a rich source of diverse and bioactive metabolites

(2017) Clara Chepkirui et al.   MYCOLOGICAL PROGRESS

First Report of Diaporthe stewartii Causing Phomopsis Stem Canker of Sunflower (Helianthus annuus) in Minnesota

(2017) T. R. Olson et al.   PLANT DISEASE

Transcriptomics technologies

(2017) Rohan Lowe et al.   PLoS Computational Biology

A plant pathology perspective of fungal genome sequencing

(2017) Janneke Aylward et al.   IMA Fungus

Emerging citrus diseases in Europe caused by species of Diaporthe

(2017) Vladimiro Guarnaccia et al.   IMA Fungus

Diaporthe is paraphyletic

(2017) Yahui Gao et al.   IMA Fungus

Coming of age: ten years of next-generation sequencing technologies

(2016) Sara Goodwin et al.   NATURE REVIEWS GENETICS

Identification and characterization of a fusarium head blight resistance geneTaACTin wheat QTL-2DL

(2016) Udaykumar Kage et al.   PLANT BIOTECHNOLOGY JOURNAL

First Report of Diaporthe eres Associated with Cane Blight of Grapevine (Vitis vinifera) in Italy

(2016) T. Cinelli et al.   PLANT DISEASE

First Report of Diaporthe rudis in Chile Causing Stem-End Rot on ‘Hass’ Avocado Fruit Imported From California

(2016) C. Torres et al.   PLANT DISEASE

UnravellingDiaporthespecies associated withCamellia

(2016) Yahui Gao et al.   SYSTEMATICS AND BIODIVERSITY

Elucidating the Role of Effectors in Plant-Fungal Interactions: Progress and Challenges

(2016) Carrie Selin et al.   Frontiers in Microbiology

Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility

(2016) Febé E. Meyer et al.   Frontiers in Plant Science

Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq

(2016) Lei Gao et al.   Frontiers in Physiology

Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

(2015) Abraham Morales-Cruz et al.   BMC GENOMICS

What the transcriptome does not tell — proteomics and metabolomics are closer to the plants’ patho-phenotype

(2015) Ivo Feussner et al.   CURRENT OPINION IN PLANT BIOLOGY

Diaporthe species occurring on Lithocarpus glabra in China, with descriptions of five new species

(2015) YaHui Gao et al.   Fungal Biology

Endophytic Diaporthe associated with Citrus: A phylogenetic reassessment with seven new species from China

(2015) Feng Huang et al.   Fungal Biology

The Diaporthe sojae species complex: Phylogenetic re-assessment of pathogens associated with soybean, cucurbits and other field crops

(2015) Dhanushka Udayanga et al.   Fungal Biology

The Fungal Cell-Wall Integrity MAPK Cascade Is Crucial for Hyphal Network Formation and Maintenance of Restrictive Growth ofEpichloë festucaein Symbiosis WithLolium perenne

(2015) Yvonne Becker et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Diversity of Diaporthe species associated with wood cankers of fruit and nut crops in northern California

(2015) Daniel P. Lawrence et al.   MYCOLOGIA

Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity

(2015) Urs Lahrmann et al.   NEW PHYTOLOGIST

Insights into the genus Diaporthe: phylogenetic species delimitation in the D. eres species complex

(2014) Dhanushka Udayanga et al.   FUNGAL DIVERSITY

Plant pattern-recognition receptors

(2014) Cyril Zipfel   TRENDS IN IMMUNOLOGY

Secret lifestyles of Neurospora crassa

(2014) Hsiao-Che Kuo et al.   Scientific Reports

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Molecular phylogenetic analysis reveals six new species of Diaporthe from Australia

(2013) Y. P. Tan et al.   FUNGAL DIVERSITY

Fungal Planet description sheets: 107–127

(2013) P.W. Crous et al.   PERSOONIA

Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi

(2013) R. R. Gomes et al.   PERSOONIA

Characterization of Diaporthe australafricana and Diaporthe spp. Associated with Stem Canker of Blueberry in Chile

(2013) Karina Elfar et al.   PLANT DISEASE

Rethinking Antibiotic Research and Development: World War II and the Penicillin Collaborative

(2012) Roswell Quinn   AMERICAN JOURNAL OF PUBLIC HEALTH

Proteomic analysis of strawberry leaves infected with Colletotrichum fragariae

(2012) Xianping Fang et al.   Journal of Proteomics

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Indifferent, Affectionate, or Deceitful: Lifestyles and Secretomes of Fungi

(2012) Rohan G. T. Lowe et al.   PLoS Pathogens

Genetic transformation of Diaporthe phaseolorum, an endophytic fungus found in mangrove forests, mediated by Agrobacterium tumefaciens

(2011) Fernanda L. S. Sebastianes et al.   CURRENT GENETICS

The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens

(2011) Dhanushka Udayanga et al.   FUNGAL DIVERSITY

Secretomics identifies Fusarium graminearum proteins involved in the interaction with barley and wheat

(2011) FEN YANG et al.   MOLECULAR PLANT PATHOLOGY

Fungal Planet description sheets: 69–91

(2011) P.W. Crous et al.   PERSOONIA

Resolving the Diaporthe species occurring on soybean in Croatia

(2011) J.M. Santos et al.   PERSOONIA

Stem cankers on sunflower (Helianthus annuus) in Australia reveal a complex of pathogenic Diaporthe (Phomopsis) species

(2011) S.M. Thompson et al.   PERSOONIA

Light Converts Endosymbiotic Fungus to Pathogen, Influencing Seedling Survival and Niche-Space Filling of a Common Tropical Tree, Iriartea deltoidea

(2011) Patricia Álvarez-Loayza et al.   PLoS One

Fleming's penicillin producing strain is not Penicillium chrysogenum but P. rubens

(2011) Jos Houbraken et al.   IMA Fungus

Using metabolic profiling to assess plant-pathogen interactions: an example using rice (Oryza sativa) and the blast pathogen Magnaporthe grisea

(2010) Oliver A. H. Jones et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Primers for mating-type diagnosis in Diaporthe and Phomopsis: their use in teleomorph induction in vitro and biological species definition

(2010) Jorge M. Santos et al.   Fungal Biology

Phylogeny, morphology and pathogenicity of Diaporthe and Phomopsis species on almond in Portugal

(2010) Eugénio L. F. Diogo et al.   FUNGAL DIVERSITY

What triggers grass endophytes to switch from mutualism to pathogenism?

(2010) Carla J. Eaton et al.   PLANT SCIENCE

Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology

(2009) KAR-CHUN TAN et al.   MOLECULAR PLANT PATHOLOGY

Discovery of Pathogenicity Genes in the Crucifer Anthracnose FungusColletotrichum higginsianum, Using Random Insertional Mutagenesis

(2009) Aurélie Huser et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

First Report of Soybean Pod and Stem Blight Caused by Diaporthe phaseolorum var. sojae in Taiwan

(2009) C. H. Chen et al.   PLANT DISEASE

Studies onDiaporthe eresas a New Pathogen of Peach Trees in Greece

(2009) Thomas Thomidis et al.   PLANT DISEASE

NADPH Oxidases Are Involved in Differentiation and Pathogenicity in Botrytis cinerea

(2008) Nadja Segmüller et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees

(2007) Michele T. Hoffman et al.