Genome Analyses of Two Blueberry Pathogens: Diaportheamygdali CAA958 and Diaporthe eres CBS 160.32

Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies

(2022) Yansu Wang et al.   BMC GENOMICS

Comparative genomics of plant pathogenic Diaporthe species and transcriptomics of Diaporthe caulivora during host infection reveal insights into pathogenic strategies of the genus

(2022) Eilyn Mena et al.   BMC GENOMICS

The numbers of fungi: are the most speciose genera truly diverse?

(2022) Chitrabhanu S. Bhunjun et al.   FUNGAL DIVERSITY

Defense and Offense Strategies: The Role of Aspartic Proteases in Plant–Pathogen Interactions

(2021) Laura Figueiredo et al.   Biology-Basel

Diaporthe amygdali, a species complex or a complex species?

(2021) Sandra Hilário et al.   Fungal Biology

Phylogenomics of Plant-Associated Botryosphaeriaceae Species

(2021) Jadran F. Garcia et al.   Frontiers in Microbiology

Increased abundance of secreted hydrolytic enzymes and secondary metabolite gene clusters define the genomes of latent plant pathogens in the Botryosphaeriaceae

(2021) Jan H. Nagel et al.   BMC GENOMICS

The Role of Glycoside Hydrolases in Phytopathogenic Fungi and Oomycetes Virulence

(2021) Vahideh Rafiei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Surprising Story of Fusicoccin: A Wilt-Inducing Phytotoxin, a Tool in Plant Physiology and a 14-3-3-Targeted Drug

(2021) Mauro Marra et al.   Biomolecules

Using Genealogical Concordance and Coalescent-Based Species Delimitation to Assess Species Boundaries in the Diaporthe eres Complex

(2021) Sandra Hilário et al.   Journal of Fungi

Inositol Signaling in the Basidiomycete Fungus Schizophyllum commune

(2021) Reyna Murry et al.   Journal of Fungi

EffectorP 3.0: Prediction of Apoplastic and Cytoplasmic Effectors in Fungi and Oomycetes

(2021) Jana Sperschneider et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Draft Genome Sequence of Diaporthe batatatis Causing Dry Rot Disease in Sweetpotato

(2021) Yiling Yang et al.   PLANT DISEASE

Diversity and Pathogenicity of Diaporthe Species Revealed from a Survey of Blueberry Orchards in Portugal

(2021) Sandra Hilário et al.   Agriculture-Basel

Diaporthe species associated with twig blight and dieback of Vaccinium corymbosum in Portugal, with description of four new species

(2020) Sandra Hilário et al.   MYCOLOGIA

A M35 family metalloprotease is required for fungal virulence against insects by inactivating host prophenoloxidases and beyond

(2020) Antian Huang et al.   Virulence

Whole genome sequence of Diaporthe capsici, a new pathogen of walnut blight

(2020) Xinmei Fang et al.   GENOMICS

Fusicoccin: A Chemical Modulator for 14-3-3 Proteins

(2020) Junko Ohkanda   CHEMISTRY LETTERS

An exploration on the toxicity mechanisms of phytotoxins and their potential utilities

(2020) Huiling Chen et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Sulfur Homeostasis in Plants

(2020) Qian Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

High diversity of Diaporthe species associated with pear shoot canker in China

(2020) Y.S. Guo et al.   PERSOONIA

The Genome Sequence of the Citrus Melanose Pathogen Diaporthe citri and Two Citrus related Diaporthe species

(2020) Yunpeng Gai et al.   PHYTOPATHOLOGY

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

An Ssd1 Homolog Impacts Trehalose and Chitin Biosynthesis and Contributes to Virulence in Aspergillus fumigatus

(2019) Arsa Thammahong et al.   mSphere

A Small Horizontally Transferred Gene Cluster Contributes to the Sporulation of Alternaria alternata

(2019) Mingshuang Wang et al.   Genome Biology and Evolution

PHI-base: the pathogen–host interactions database

(2019) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

(2019) Carina Félix et al.   Scientific Reports

Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions

(2019) Micael Gonçalves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Involvement of Sulfur in the Biosynthesis of Essential Metabolites in Pathogenic Fungi of Animals, Particularly Aspergillus spp.: Molecular and Therapeutic Implications

(2019) Aimee M. Traynor et al.   Frontiers in Microbiology

Characterization of a novel sugar transporter involved in sugarcane bagasse degradation in Trichoderma reesei

(2018) Karoline M. V. Nogueira et al.   Biotechnology for Biofuels

Diaporthe diversity and pathogenicity revealed from a broad survey of grapevine diseases in Europe

(2018) V. Guarnaccia et al.   PERSOONIA

Analyses of the three 1-Cys Peroxiredoxins from Aspergillus fumigatus reveal that cytosolic Prx1 is central to H2O2 metabolism and virulence

(2018) Marina Campos Rocha et al.   Scientific Reports

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Subtilisin-like proteases in plant defence: the past, the present and beyond

(2017) Joana Figueiredo et al.   MOLECULAR PLANT PATHOLOGY

Evolution and genome architecture in fungal plant pathogens

(2017) Mareike Möller et al.   NATURE REVIEWS MICROBIOLOGY

First Report of Phomopsis amygdali Causing Twig Canker on Almond in Hungary

(2017) V. Varjas et al.   PLANT DISEASE

A plant pathology perspective of fungal genome sequencing

(2017) Janneke Aylward et al.   IMA Fungus

Diaporthe is paraphyletic

(2017) Yahui Gao et al.   IMA Fungus

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

(2016) Marcos Paolinelli-Alfonso et al.   BMC GENOMICS

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

(2016) Riccardo Baroncelli et al.   BMC GENOMICS

Production of antifungal and antiinsectan metabolites by the Picea endophyte Diaporthe maritima sp. nov.

(2016) Joey B. Tanney et al.   Fungal Biology

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Nudix Effectors: A Common Weapon in the Arsenal of Plant Pathogens

(2016) Suomeng Dong et al.   PLoS Pathogens

Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

(2015) Abraham Morales-Cruz et al.   BMC GENOMICS

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Comparative genomic and transcriptional analyses of the carbohydrate-active enzymes and secretomes of phytopathogenic fungi reveal their significant roles during infection and development

(2015) Xueliang Lyu et al.   Scientific Reports

Mannitol metabolism during pathogenic fungal–host interactions under stressed conditions

(2015) Mukesh Meena et al.   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Functional characterization of a xylose transporter in Aspergillus nidulans

(2014) Ana Colabardini et al.   Biotechnology for Biofuels

Widespread horizontal transfer of the cerato-ulmin gene between Ophiostoma novo-ulmi and Geosmithia species

(2014) Priscilla P. Bettini et al.   Fungal Biology

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Diaporthe: a genus of endophytic, saprobic and plant pathogenic fungi

(2013) R. R. Gomes et al.   PERSOONIA

An Enzyme Catalyzing O-Prenylation of the Glucose Moiety of Fusicoccin A, a Diterpene Glucoside Produced by the Fungus Phomopsis amygdali

(2012) Motoyoshi Noike et al.   CHEMBIOCHEM

A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis)

(2012) Dhanushka Udayanga et al.   FUNGAL DIVERSITY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Compartmentalization and regulation of arylsulfatase activities in Streptomyces sp., Microbacterium sp. and Rhodococcus sp. soil isolates in response to inorganic sulfate limitation

(2012) Mickael Cregut et al.   MICROBIOLOGICAL RESEARCH

The velvet complex governs mycotoxin production and virulence ofFusarium oxysporumon plant and mammalian hosts

(2012) Manuel S. López-Berges et al.   MOLECULAR MICROBIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Molecular Breeding of a Fungus Producing a Precursor Diterpene Suitable for Semi-Synthesis by Dissection of the Biosynthetic Machinery

(2012) Motoyoshi Noike et al.   PLoS One

Different Chitin Synthase Genes Are Required for Various Developmental and Plant Infection Processes in the Rice Blast Fungus Magnaporthe oryzae

(2012) Ling-An Kong et al.   PLoS Pathogens

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres

(2012) Simon R Ellwood et al.   GENOME BIOLOGY

The genus Phomopsis: biology, applications, species concepts and names of common phytopathogens

(2011) Dhanushka Udayanga et al.   FUNGAL DIVERSITY

An Endophytic Phomopsis sp. Possessing Bioactivity and Fuel Potential with its Volatile Organic Compounds

(2011) Sanjay K. Singh et al.   MICROBIAL ECOLOGY

Strategies for acquiring the phospholipid metabolite inositol in pathogenic bacteria, fungi and protozoa: making it and taking it

(2009) T. B. Reynolds   MICROBIOLOGY-SGM

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH