Dual RNA-Sequencing Analysis of Resistant (Pinus pinea) and Susceptible (Pinus radiata) Hosts during Fusarium circinatum Challenge

The transcriptome of Pinus pinaster under Fusarium circinatum challenge

(2020) Laura Hernandez-Escribano et al.   BMC GENOMICS

Fusarium oxysporum infection activates the plastidial branch of the terpenoid biosynthesis pathway in flax, leading to increased ABA synthesis

(2020) Aleksandra Boba et al.   PLANTA

Comparative Transcriptomic Response of Two Pinus Species to Infection with the Pine Wood Nematode Bursaphelenchus xylophilus

(2020) Gaspar et al.   Forests

Pathogenicity and Virulence Factors of Fusarium graminearum Including Factors Discovered Using Next Generation Sequencing Technologies and Proteomics

(2020) Molemi E. Rauwane et al.   Microorganisms

Climate drives intraspecific differentiation in the expression of growth-defence trade-offs in a long-lived pine species

(2020) Carla Vázquez-González et al.   Scientific Reports

Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l.

(2019) Andriy Kovalchuk et al.   BMC PLANT BIOLOGY

Environmentally friendly methods for controlling pine pitch canker

(2019) J. Martín‐García et al.   PLANT PATHOLOGY

Pinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach

(2019) Joana Amaral et al.   Frontiers in Plant Science

Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts

(2019) Erik A. Visser et al.   Microorganisms

EnTAP: Bringing Faster and Smarter Functional Annotation to Non‐Model Eukaryotic Transcriptomes

(2019) Alexander J. Hart et al.   Molecular Ecology Resources

Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions

(2019) Micael Gonçalves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Pine Pitch Canker (PPC): Pathways of Pathogen Spread and Preventive Measures

(2019) Cristina Zamora-Ballesteros et al.   Forests

Dual RNA-Sequencing to Elucidate the Plant-Pathogen Duel

(2018) Sanushka Naidoo et al.   CURRENT ISSUES IN MOLECULAR BIOLOGY

Herbaceous plants in the understory of a pitch canker-affected Pinus radiata plantation are endophytically infected with Fusarium circinatum

(2018) L. Hernandez-Escribano et al.   Fungal Ecology

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

(2018) Jana Sperschneider et al.   MOLECULAR PLANT PATHOLOGY

Evaluation of the Susceptibility of Several Czech Conifer Provenances to Fusarium circinatum

(2018) Jorge Martín-García et al.   Forests

Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation)

(2018) Erik A. Visser et al.   BMC GENOMICS

Role of secondary metabolites in plant defense against pathogens

(2018) Madiha Zaynab et al.   MICROBIAL PATHOGENESIS

EU Legislation on Forest Plant Health: An Overview with a Focus on Fusarium circinatum

(2018) Anna Vettraino et al.   Forests

A Comparative Study of the Pathogenicity of Fusarium circinatum and other Fusarium Species in Polish Provenances of P. sylvestris L.

(2018) Kateryna Davydenko et al.   Forests

Genotype-specific suppression of multiple defense pathways in apple root during infection by Pythium ultimum

(2018) Yanmin Zhu et al.   Horticulture Research

Dirigent proteins in plants: modulating cell wall metabolism during abiotic and biotic stress exposure

(2017) Candelas Paniagua et al.   JOURNAL OF EXPERIMENTAL BOTANY

Receptor Kinases in Plant-Pathogen Interactions: More Than Pattern Recognition

(2017) Dingzhong Tang et al.   PLANT CELL

Expression profiling in Pinus radiata infected with Fusarium circinatum

(2017) Angela Carrasco et al.   Tree Genetics & Genomes

Phenotypical and Molecular Characterisation of Fusarium circinatum: Correlation with Virulence and Fungicide Sensitivity

(2017) Martin Mullett et al.   Forests

Susceptibility of Several Northeastern Conifers to Fusarium circinatum and Strategies for Biocontrol

(2017) Jorge Martín-García et al.   Forests

Identification of Norway Spruce MYB-bHLH-WDR Transcription Factor Complex Members Linked to Regulation of the Flavonoid Pathway

(2017) Miguel Nemesio-Gorriz et al.   Frontiers in Plant Science

Transcriptome analysis of the fungal pathogen Fusarium oxysporum f. sp. medicaginis during colonisation of resistant and susceptible Medicago truncatula hosts identifies differential pathogenicity profiles and novel candidate effectors

(2016) Louise F. Thatcher et al.   BMC GENOMICS

Abscisic Acid Catabolism Generates Phaseic Acid, a Molecule Able to Activate a Subset of ABA Receptors

(2016) Pedro L. Rodriguez   Molecular Plant

Different alleles of a gene encoding leucoanthocyanidin reductase (PaLAR3) influence resistance against the fungus Heterobasidion parviporum in Picea abies

(2016) Miguel Nemesio Gorriz et al.   PLANT PHYSIOLOGY

Emerging Needle Blight Diseases in Atlantic Pinus Ecosystems of Spain

(2016) Esther Ortíz de Urbina et al.   Forests

Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility

(2016) Febé E. Meyer et al.   Frontiers in Plant Science

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome

(2015) Erik A. Visser et al.   BMC GENOMICS

Transcriptome and hormone profiling reveals Eucalyptus grandis defence responses against Chrysoporthe austroafricana

(2015) Ronishree Mangwanda et al.   BMC GENOMICS

Management of Fusarium diseases affecting conifers

(2015) Thomas R. Gordon et al.   CROP PROTECTION

Fungal chitinases: function, regulation, and potential roles in plant/pathogen interactions

(2015) Thorsten Langner et al.   CURRENT GENETICS

Crosstalk among Jasmonate, Salicylate and Ethylene Signaling Pathways in Plant Disease and Immune Responses

(2015) You-Xin Yang et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

International variation in phytosanitary legislation and regulations governing importation of plants for planting

(2015) R. Eschen et al.   ENVIRONMENTAL SCIENCE & POLICY

Genome-wide gene expression dynamics of the fungal pathogenDothistroma septosporumthroughout its infection cycle of the gymnosperm hostPinus radiata

(2015) Rosie E. Bradshaw et al.   MOLECULAR PLANT PATHOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Identification of protein coding regions in RNA transcripts

(2015) Shiyuyun Tang et al.   NUCLEIC ACIDS RESEARCH

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Relative expression of seven candidate genes for pathogen resistance on Pinus radiata infected with Fusarium circinatum

(2015) Andrea Donoso et al.   PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY

Plant and pathogen nutrient acquisition strategies

(2015) Urooj Fatima et al.   Frontiers in Plant Science

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Development and commercialisation of the Pinus patula × P. tecunumanii hybrid in response to the threat of Fusarium circinatum

(2014) A. Kanzler et al.   NEW FORESTS

The Pathogen-Host Interactions database (PHI-base): additions and future developments

(2014) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

Emerging Functions of Nodulin-Like Proteins in Non-Nodulating Plant Species

(2014) Nicolas Denancé et al.   PLANT AND CELL PHYSIOLOGY

A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms

(2014) Luis Valledor et al.   PLANT JOURNAL

Alternative species to replace Monterey pine plantations affected by pitch canker caused byFusarium circinatumin northern Spain

(2014) P. Martínez-Álvarez et al.   PLANT PATHOLOGY

Association of the pitch canker pathogenFusarium circinatumwith grass hosts in commercial pine production areas of South Africa

(2014) Cassandra L Swett et al.   Southern Forests

Dual RNA-seq of the plant pathogen Phytophthora ramorum and its tanoak host

(2014) Katherine J. Hayden et al.   Tree Genetics & Genomes

Nitrogen regulation of fungal secondary metabolism in fungi

(2014) Bettina Tudzynski   Frontiers in Microbiology

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Changes in xyloglucan endotransglucosylase/hydrolase (XTHs) expression and XET activity during apple fruit infection by Penicillium expansum Link. A

(2013) Jesús Muñoz-Bertomeu et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Resistance levels of Spanish conifers againstFusarium circinatumandDiplodia pinea

(2013) E. Iturritxa et al.   FOREST PATHOLOGY

Separate enrichment analysis of pathways for up- and downregulated genes

(2013) G. Hong et al.   Journal of the Royal Society Interface

Genomic and transcriptomic insights into lifestyle transitions of a hemi-biotrophic fungal pathogen

(2013) John M. McDowell   NEW PHYTOLOGIST

ETHYLENE RESPONSE FACTOR6 Acts as a Central Regulator of Leaf Growth under Water-Limiting Conditions in Arabidopsis

(2013) M. Dubois et al.   PLANT PHYSIOLOGY

Chitosan application improves resistance to Fusarium circinatum in Pinus patula

(2013) K.N.E. Fitza et al.   SOUTH AFRICAN JOURNAL OF BOTANY

Evaluating methyl jasmonate for induction of resistance to Fusarium oxysporum, F. circinatum and Ophiostoma novo-ulmi

(2012) M. Vivas et al.   Forest Systems

Methyl esterification of pectin plays a role during plant–pathogen interactions and affects plant resistance to diseases

(2012) Vincenzo Lionetti et al.   JOURNAL OF PLANT PHYSIOLOGY

The tolerance of Pinus patula × Pinus tecunumanii, and other pine hybrids, to Fusarium circinatum in greenhouse trials

(2012) R. G. Mitchell et al.   NEW FORESTS

ERF5 and ERF6 Play Redundant Roles as Positive Regulators of JA/Et-Mediated Defense against Botrytis cinerea in Arabidopsis

(2012) Caroline S. Moffat et al.   PLoS One

EST sequencing and gene expression profiling of defence-related genes from Persea americana infected with Phytophthora cinnamomi

(2011) Waheed Mahomed et al.   BMC PLANT BIOLOGY

Chalcone synthase and its functions in plant resistance

(2011) T. T. H. Dao et al.   PHYTOCHEMISTRY REVIEWS

Characterization of a Novel PlantainAsrGene,MpAsr, that is Regulated in Response to Infection ofFusarium oxysporumf. sp. cubenseand Abiotic Stresses

(2010) Hai-Yan Liu et al.   Journal of Integrative Plant Biology

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

(2009) Abdelali Barakat et al.   BMC PLANT BIOLOGY

Poplar and Pathogen Interactions: Insights fromPopulusGenome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

(2009) Sébastien Duplessis et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Transcriptome Profiling in Hybrid Poplar Following Interactions withMelampsoraRust Fungi

(2009) Aïda Azaiez et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Identification and characterization of differentially expressed genes from Fagus sylvatica roots after infection with Phytophthora citricola

(2009) Katja Schlink   PLANT CELL REPORTS

Carica papaya Genes Regulated by Phytophthora palmivora: A Model System for Genomic Studies of Compatible Phytophthora-plant Interactions

(2009) Brad W. Porter et al.   Tropical Plant Biology

Pitch canker caused byFusarium circinatum– a growing threat to pine plantations and forests worldwide

(2008) M. J. Wingfield et al.   AUSTRALASIAN PLANT PATHOLOGY

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY