Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions

A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

(2019) Carina Félix et al.   Scientific Reports

Lasiodiplodia theobromae as a Producer of Biotechnologically Relevant Enzymes

(2018) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular Profiling of Pierce’s Disease Outlines the Response Circuitry of Vitis vinifera to Xylella fastidiosa Infection

(2018) Paulo A. Zaini et al.   Frontiers in Plant Science

Neofusicoccum parvum Colonization of the Grapevine Woody Stem Triggers Asynchronous Host Responses at the Site of Infection and in the Leaves

(2017) Mélanie Massonnet et al.   Frontiers in Plant Science

Genomes and Transcriptomes of Partners in Plant-Fungal- Interactions between Canola (Brassica napus) and Two Leptosphaeria Species

(2017) Rohan G. T. Lowe et al.   PLoS One

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

(2016) Marcos Paolinelli-Alfonso et al.   BMC GENOMICS

Life traits of four Botryosphaeriaceae species and molecular responses of different grapevine cultivars or hybrids

(2016) A. Bellée et al.   PLANT PATHOLOGY

Nudix Effectors: A Common Weapon in the Arsenal of Plant Pathogens

(2016) Suomeng Dong et al.   PLoS Pathogens

Temperature Modulates the Secretome of the Phytopathogenic Fungus Lasiodiplodia theobromae

(2016) Carina Félix et al.   Frontiers in Plant Science

Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility

(2016) Febé E. Meyer et al.   Frontiers in Plant Science

Grapevine Pathogenic Microorganisms: Understanding Infection Strategies and Host Response Scenarios

(2016) Grace Armijo et al.   Frontiers in Plant Science

Gene Expression Changes during the Gummosis Development of Peach Shoots in Response to Lasiodiplodia theobromae Infection Using RNA-Seq

(2016) Lei Gao et al.   Frontiers in Physiology

Climate change and infectious diseases of wildlife: Altered interactions between pathogens, vectors and hosts

(2016) Milena Gallana et al.   Current Zoology

Distinctive expansion of gene families associated with plant cell wall degradation, secondary metabolism, and nutrient uptake in the genomes of grapevine trunk pathogens

(2015) Abraham Morales-Cruz et al.   BMC GENOMICS

Proteome and transcript analysis of Vitis vinifera cell cultures subjected to Botrytis cinerea infection

(2015) K. Dadakova et al.   Journal of Proteomics

Transcriptome sequencing of a thalloid bryophyte; Dumortiera hirsuta (Sw) Nees: assembly, annotation and marker discovery

(2015) Harpal Singh et al.   Scientific Reports

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series

(2014) M. J. Nueda et al.   BIOINFORMATICS

Identification and pathogenicity of Lasiodiplodia theobromae causing dieback of table grapes in Peru

(2014) E. Rodríguez-Gálvez et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

High-Resolution Transcript Profiling of the Atypical Biotrophic Interaction betweenTheobroma cacaoand the Fungal PathogenMoniliophthora perniciosa

(2014) Paulo José Pereira Lima Teixeira et al.   PLANT CELL

Susceptibility of Cultivated and Wild Vitis spp. to Wood Infection by Fungal Trunk Pathogens

(2013) Renaud Travadon et al.   PLANT DISEASE

Simultaneous Transcriptome Analysis of Sorghum and Bipolaris sorghicola by Using RNA-seq in Combination with De Novo Transcriptome Assembly

(2013) Takayuki Yazawa et al.   PLoS One

The Botryosphaeriaceae: genera and species known from culture

(2013) A.J.L. Phillips et al.   STUDIES IN MYCOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Phytopathogen Effectors Subverting Host Immunity: Different Foes, Similar Battleground

(2012) Daolong Dou et al.   Cell Host & Microbe

Compartmentalization and regulation of arylsulfatase activities in Streptomyces sp., Microbacterium sp. and Rhodococcus sp. soil isolates in response to inorganic sulfate limitation

(2012) Mickael Cregut et al.   MICROBIOLOGICAL RESEARCH

Identification and Characterization of the Defensin-Like Gene Family of Grapevine

(2012) Lisa Giacomelli et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis

(2012) O. Windram et al.   PLANT CELL

Grapevine trunk diseases: complex and still poorly understood

(2012) C. Bertsch et al.   PLANT PATHOLOGY

Arabidopsis WRKY33 Is a Key Transcriptional Regulator of Hormonal and Metabolic Responses toward Botrytis cinerea Infection

(2012) R. P. Birkenbihl et al.   PLANT PHYSIOLOGY

Evolution of jasmonate and salicylate signal crosstalk

(2012) Jennifer S. Thaler et al.   TRENDS IN PLANT SCIENCE

CDPKs in immune and stress signaling

(2012) Marie Boudsocq et al.   TRENDS IN PLANT SCIENCE

MAP Kinase Cascades in Arabidopsis Innate Immunity

(2012) Magnus W. Rasmussen et al.   Frontiers in Plant Science

Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

(2011) Brian C King et al.   Biotechnology for Biofuels

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Protein kinase signaling networks in plant innate immunity

(2011) Guillaume Tena et al.   CURRENT OPINION IN PLANT BIOLOGY

Influence of atmospheric and climatic change on plant-pathogen interactions

(2011) D. M. Eastburn et al.   PLANT PATHOLOGY

Cytochrome P450 enzymes in the fungal kingdom

(2010) B. Črešnar et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Pathogenicity of Botryosphaeriaceae Species Isolated from Grapevine Cankers in California

(2009) J. R. Úrbez-Torres et al.   PLANT DISEASE

The grapevine transcription factor WRKY2 influences the lignin pathway and xylem development in tobacco

(2009) Sabine Guillaumie et al.   PLANT MOLECULAR BIOLOGY

Metabolism and roles of stilbenes in plants

(2009) Julie Chong et al.   PLANT SCIENCE

Synergistic Activation of theArabidopsisNADPH Oxidase AtrbohD by Ca2+and Phosphorylation

(2008) Yoko Ogasawara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Rapid and effective method for RNA extraction from different tissues of grapevine and other woody plants

(2008) Giorgio Gambino et al.   PHYTOCHEMICAL ANALYSIS

Identification and Pathogenicity of Lasiodiplodia theobromae and Diplodia seriata, the Causal Agents of Bot Canker Disease of Grapevines in Mexico

(2008) J. R. Úrbez-Torres et al.   PLANT DISEASE

First Report of Lasiodiplodia theobromae Associated with Decline of Grapevine Rootstock Mother Plants in Spain

(2008) A. Aroca et al.   PLANT DISEASE

Identification, expression analysis and characterization of defense and signaling genes in Vitis vinifera

(2007) Julie Chong et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Exogenous application of a lipid transfer protein-jasmonic acid complex induces protection of grapevine towards infection by Botrytis cinerea

(2007) T. Girault et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY