Selection in coral mitogenomes, with insights into adaptations in the deep sea

Large dataset of octocoral mitochondrial genomes provides new insights into mt-mutS evolution and function

(2022) Viraj Muthye et al.   DNA REPAIR

Management of validation of HPLC method for determination of acetylsalicylic acid impurities in a new pharmaceutical product

(2022) Małgorzata Kowalska et al.   Scientific Reports

Positive selection over the mitochondrial genome and its role in the diversification of gentoo penguins in response to adaptation in isolation

(2022) D. Noll et al.   Scientific Reports

A decade of population genetics studies of scleractinian corals: A systematic review

(2022) Viridiana Alvarado-Cerón et al.   MARINE ENVIRONMENTAL RESEARCH

Phylogenetic Relationships and Adaptation in Deep-Sea Mussels: Insights from Mitochondrial Genomes

(2021) Kai Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Origin and Correlated Evolution of Symbiosis and Coloniality in Scleractinian Corals

(2020) Ana Navarro Campoy et al.   Frontiers in Marine Science

Phylogenetics and Mitogenome Organisation in Black Corals (Anthozoa: Hexacorallia: Antipatharia): An Order-Wide Survey Inferred From Complete Mitochondrial Genomes

(2020) Nick J. Barrett et al.   Frontiers in Marine Science

Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time

(2020) Andrea M. Quattrini et al.   Nature Ecology & Evolution

The earliest diverging extant scleractinian corals recovered by mitochondrial genomes

(2020) Isabela G. L. Seiblitz et al.   Scientific Reports

Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)

(2020) Catherine S McFadden et al.   SYSTEMATIC BIOLOGY

Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia)

(2019) Raissa I. Hogan et al.   Mitochondrial DNA Part A

The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids

(2019) Mei Yang et al.   PLoS One

Comparative analysis of mitochondrial genome of a deep-sea crab Chaceon granulates reveals positive selection and novel genetic features

(2019) Bo Zhang et al.   Journal of Oceanology and Limnology

Chromids aid genome expansion and functional diversification in the family Burkholderiaceae

(2018) George C diCenzo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber

(2018) Wendan Mu et al.   PLoS One

Positive Selection Drove the Adaptation of Mitochondrial Genes to the Demands of Flight and High-Altitude Environments in Grasshoppers

(2018) Xiao-Dong Li et al.   Frontiers in Genetics

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems

(2017) Andrea M. Quattrini et al.   Molecular Ecology Resources

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment

(2017) Bo Zhang et al.   Ecology and Evolution

Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia)

(2017) Juan Sebastián Celis et al.   PLoS One

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

PHYLUCE is a software package for the analysis of conserved genomic loci

(2015) Brant C. Faircloth   BIOINFORMATICS

New abyssal Primnoidae (Anthozoa: Octocorallia) from the Clarion-Clipperton Fracture Zone, equatorial northeastern Pacific

(2015) Stephen D. Cairns   Marine Biodiversity

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Review and meta-analysis of natural selection in mitochondrial complex I in metazoans

(2014) Michael R. Garvin et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Mitogenomic analyses propose positive selection in mitochondrial genes for high-altitude adaptation in galliform birds

(2014) Taicheng Zhou et al.   MITOCHONDRION

Transmission of mitochondrial mutations and action of purifying selection in Drosophila melanogaster

(2014) Hansong Ma et al.   NATURE GENETICS

Challenging the paradigms of deep-sea ecology

(2014) Roberto Danovaro et al.   TRENDS IN ECOLOGY & EVOLUTION

Animal Mitochondria: Evolution, Function, and Disease

(2013) M. Tao et al.   CURRENT MOLECULAR MEDICINE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Short-term and latent post-settlement effects associated with elevated temperature and oxidative stress on larvae from the coral Porites astreoides

(2012) C. Ross et al.   CORAL REEFS

The Mitochondrial Genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) Supports Intramolecular Recombination as the Primary Mechanism of Gene Rearrangement in Octocoral Mitochondrial Genomes

(2012) Stephanie A. Brockman et al.   Genome Biology and Evolution

The Multipartite Mitochondrial Genome of Liposcelis bostrychophila: Insights into the Evolution of Mitochondrial Genomes in Bilateral Animals

(2012) Dan-Dan Wei et al.   PLoS One

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

(2011) Jaret P Bilewitch et al.   BMC EVOLUTIONARY BIOLOGY

Evolutionary Patterns of the Mitochondrial Genome in Metazoa: Exploring the Role of Mutation and Selection in Mitochondrial Protein–Coding Genes

(2011) S. Castellana et al.   Genome Biology and Evolution

Mitochondrial ATP synthase: architecture, function and pathology

(2011) An I. Jonckheere et al.   JOURNAL OF INHERITED METABOLIC DISEASE

The Global Diversity of Sea Pens (Cnidaria: Octocorallia: Pennatulacea)

(2011) Gary C. Williams   PLoS One

Statistical Properties of the Branch-Site Test of Positive Selection

(2010) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Comprehensive Phylogenetic Analysis of the Scleractinia (Cnidaria, Anthozoa) Based on Mitochondrial CO1 Sequence Data

(2010) Marcelo V. Kitahara et al.   PLoS One

'Why genomes in pieces?' revisited: Sucking lice do their own thing in mtDNA circle game

(2009) D. M. Rand   GENOME RESEARCH

Ecology of mesophotic coral reefs

(2009) Michael P. Lesser et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS