Phylogenetics and Mitogenome Organisation in Black Corals (Anthozoa: Hexacorallia: Antipatharia): An Order-Wide Survey Inferred From Complete Mitochondrial Genomes

Evolutionary implications of analyses of complete mitochondrial genomes across order Zoantharia (Cnidaria: Hexacorallia)

(2020) Angelo Poliseno et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

New cytotoxic fatty acid esters from the black coral, Antipathes dichotoma

(2019) Mohamed A Ghandourah et al.   TROPICAL JOURNAL OF PHARMACEUTICAL RESEARCH

OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

(2019) Stephan Greiner et al.   NUCLEIC ACIDS RESEARCH

Novel diversity in mitochondrial genomes of deep-sea Pennatulacea (Cnidaria: Anthozoa: Octocorallia)

(2019) Raissa I. Hogan et al.   Mitochondrial DNA Part A

NUMT Confounding Biases Mitochondrial Heteroplasmy Calls in Favor of the Reference Allele

(2019) Hannah Maude et al.   Frontiers in Cell and Developmental Biology

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Zoantharian mitochondrial genomes contain unique complex group I introns and highly conserved intergenic regions

(2017) Sylvia Ighem Chi et al.   GENE

UFBoot2: Improving the Ultrafast Bootstrap Approximation

(2017) Diep Thi Hoang et al.   MOLECULAR BIOLOGY AND EVOLUTION

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment

(2017) Bo Zhang et al.   Ecology and Evolution

Black corals (Anthozoa: Antipatharia) of the Clarion-Clipperton Fracture Zone

(2017) Tina N. Molodtsova et al.   Marine Biodiversity

Evolutionary and biogeographical implications of degraded LAGLIDADG endonuclease functionality and group I intron occurrence in stony corals (Scleractinia) and mushroom corals (Corallimorpharia)

(2017) Juan Sebastián Celis et al.   PLoS One

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

Multiplexed pyrosequencing of nine sea anemone (Cnidaria: Anthozoa: Hexacorallia: Actiniaria) mitochondrial genomes

(2015) Jonathan Foox et al.   Mitochondrial DNA

Mitochondrial Genome Rearrangements in the Scleractinia/Corallimorpharia Complex: Implications for Coral Phylogeny

(2014) Mei-Fang Lin et al.   Genome Biology and Evolution

Octocoral Mitochondrial Genomes Provide Insights into the Phylogenetic History of Gene Order Rearrangements, Order Reversals, and Cnidarian Phylogenetics

(2014) D. F. Figueroa et al.   Genome Biology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Cnidarian phylogenetic relationships as revealed by mitogenomics

(2013) Ehsan Kayal et al.   BMC EVOLUTIONARY BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

The evolutionary history of the order Antipatharia (Cnidaria: Anthozoa: Hexacorallia) as inferred from mitochondrial and nuclear DNA: implications for black coral taxonomy and systematics

(2013) Mercer R. Brugler et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Telopathes magna gen. nov., spec. nov. (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) from deep waters off Atlantic Canada and the first molecular phylogeny of the deep-sea family Schizopathidae

(2013) K. G. MacIsaac et al.   ZOOTAXA

Small proteins: untapped area of potential biological importance

(2013) Mingming Su et al.   Frontiers in Genetics

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The Mitochondrial Genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) Supports Intramolecular Recombination as the Primary Mechanism of Gene Rearrangement in Octocoral Mitochondrial Genomes

(2012) Stephanie A. Brockman et al.   Genome Biology and Evolution

Isolation and identification of chitin in the black coral Parantipathes larix (Anthozoa: Cnidaria)

(2012) Marzia Bo et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Morphological and molecular characterization of the problematic whip black coral genus Stichopathes (Hexacorallia: Antipatharia) from Indonesia (North Sulawesi, Celebes Sea)

(2012) MARZIA BO et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Using morphometrics, in situ observations and genetic characters to distinguish among commercially valuable Hawaiian black coral species; a redescription of Antipathes grandis Verrill, 1928 (Antipatharia�:�Antipathidae)

(2011) Daniel Wagner et al.   INVERTEBRATE SYSTEMATICS

Mitogenome rearrangement in the cold-water scleractinian coral Lophelia pertusa (Cnidaria, Anthozoa) involves a long-term evolving group I intron

(2011) Åse Emblem et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Antibacterial Sphingolipid and Steroids from the Black Coral Antipathes dichotoma

(2010) Sultan Samran Al-Lihaibi et al.   CHEMICAL & PHARMACEUTICAL BULLETIN

Alkaloids from the South China Sea Black Coral Antipathes dichotoma

(2009) Shu-Hua Qi et al.   CHEMICAL & PHARMACEUTICAL BULLETIN

Description ofPseudocirrhipathes(Cnidaria: Anthozoa: Hexacorallia: Antipathidae), a new genus of whip black corals from the Indo‐Pacific

(2009) M. Bo et al.   ITALIAN JOURNAL OF ZOOLOGY

Characteristics of a black coral meadow in the twilight zone of the central Mediterranean Sea

(2009) M Bo et al.   MARINE ECOLOGY PROGRESS SERIES

The Mitochondrial Genome of a Deep-Sea Bamboo Coral (Cnidaria, Anthozoa, Octocorallia, Isididae): Genome Structure and Putative Origins of Replication Are Not Conserved Among Octocorals

(2008) Mercer R. Brugler et al.   JOURNAL OF MOLECULAR EVOLUTION

Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction

(2008) J. L Boore et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES