Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber

The complete mitochondrial genome of the alvinocaridid shrimp Shinkaicaris leurokolos (Decapoda, Caridea): Insight into the mitochondrial genetic basis of deep-sea hydrothermal vent adaptation in the shrimp

(2018) Shao'e Sun et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Benthodytes marianensis, a new species of abyssal elasipodid sea cucumbers (Elasipodida: Psychropotidae) from the Mariana Trench area

(2018) YA-NAN LI et al.   ZOOTAXA

Molecular phylogeny of extant Holothuroidea (Echinodermata)

(2017) Allison K. Miller et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment

(2017) Bo Zhang et al.   Ecology and Evolution

Molecular genetic markers of intra- and interspecific divergence within starfish and sea urchins (Echinodermata)

(2016) N. B. Petrov et al.   BIOCHEMISTRY-MOSCOW

Deep-sea diversity patterns are shaped by energy availability

(2016) Skipton N. C. Woolley et al.   NATURE

Energy efficiency trade-offs drive nucleotide usage in transcribed regions

(2016) Wei-Hua Chen et al.   Nature Communications

Submersible- and lander-observed community patterns in the Mariana and New Britain trenches: Influence of productivity and depth on epibenthic and scavenging communities

(2015) Natalya D. Gallo et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

The complete mitochondrial genome sequence of the network pipefish (Corythoichthys flavofasciatus) and the analyses of phylogenetic relationships within the Syngnathidae species

(2015) Huixian Zhang et al.   Marine Genomics

Concerted Evolution of Duplicate Control Regions in the Mitochondria of Species of the Flatfish Family Bothidae (Teleostei: Pleuronectiformes)

(2015) Dong-He Li et al.   PLoS One

A novel model of double replications and random loss accounts for rearrangements in the Mitogenome of Samariscus latus (Teleostei: Pleuronectiformes)

(2014) Wei Shi et al.   BMC GENOMICS

Complete mitochondrial genome of Chilean sea urchin:Loxechinus albus(Camarodonta, Parechinidae)

(2014) Gila Jung et al.   Mitochondrial DNA

Mitogenomic analyses propose positive selection in mitochondrial genes for high-altitude adaptation in galliform birds

(2014) Taicheng Zhou et al.   MITOCHONDRION

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

(2014) Min Tang et al.   NUCLEIC ACIDS RESEARCH

Complete mitogenome sequences of four flatfishes (Pleuronectiformes) reveal a novel gene arrangement of L-strand coding genes

(2013) Wei Shi et al.   BMC EVOLUTIONARY BIOLOGY

PAMLX: A Graphical User Interface for PAML

(2013) B. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes

(2013) Jon Bohlin et al.   PLoS One

Molecular identification of genus Scylla (Decapoda: Portunidae) based on DNA barcoding and polymerase chain reaction

(2012) Hongyu Ma et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Fungal diversity in deep-sea extreme environments

(2012) Yuriko Nagano et al.   Fungal Ecology

Multiple independent origins of mitochondrial control region duplications in the order Psittaciformes

(2012) Erin E. Schirtzinger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

System of the class Holothuroidea

(2012) A. V. Smirnov   PALEONTOLOGICAL JOURNAL

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Unusual conservation of mitochondrial gene order in Crassostrea oysters: evidence for recent speciation in Asia

(2011) Jianfeng Ren et al.   BMC EVOLUTIONARY BIOLOGY

Mitogenome of the small abalone Haliotis diversicolor Reeve and phylogenetic analysis within Gastropoda

(2011) Yi Xin et al.   Marine Genomics

Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation

(2011) Li Yu et al.   MITOCHONDRION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection

(2011) Ivanna H. Tomasco et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

raxmlGUI: a graphical front-end for RAxML

(2011) Daniele Silvestro et al.   ORGANISMS DIVERSITY & EVOLUTION

Characterization of mitochondrial genome of sea cucumber Stichopus horrens: A novel gene arrangement in Holothuroidea

(2011) SiGang Fan et al.   Science China-Life Sciences

Comparative mitochondrial genomics within sea cucumber (Apostichopus japonicus): Provide new insights into relationships among color variants

(2010) Xiu-Jun Sun et al.   AQUACULTURE

Concerted evolution of duplicated mitochondrial control regions in three related seabird species

(2010) James A Morris-Pocock et al.   BMC EVOLUTIONARY BIOLOGY

Complete sequence and gene organization of the mitochondrial genome for Hubbard's sportive lemur (Lepilemur hubbardorum)

(2010) Runhua Lei et al.   GENE

Adaptive evolution of the mitochondrial ND6 gene in the domestic horse

(2010) T. Ning et al.   GENETICS AND MOLECULAR RESEARCH

Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: Insights in phylogenetic relationships of Echinodermata

(2010) Marleen Perseke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Complete mitochondrial genome of the sea cucumber Apostichopus japonicus (Echinodermata: Holothuroidea): The first representative from the subclass Aspidochirotacea with the echinoderm ground pattern

(2009) Xin Shen et al.   GENE

The Mitochondrial Genomes of Two Scallops, Argopecten irradians and Chlamys farreri (Mollusca: Bivalvia): The Most Highly Rearranged Gene Order in the Family Pectinidae

(2009) Jianfeng Ren et al.   JOURNAL OF MOLECULAR EVOLUTION

GenomeVx: simple web-based creation of editable circular chromosome maps

(2008) G. C. Conant et al.   BIOINFORMATICS

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Mitochondrial genome analysis of Ochotona curzoniae and implication of cytochrome c oxidase in hypoxic adaptation

(2008) Yongjun Luo et al.   MITOCHONDRION

Evolution of mitochondrial gene orders in echinoderms

(2008) Marleen Perseke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION