The complete mitochondrial genome of Calyptogena marissinica (Heterodonta: Veneroida: Vesicomyidae): Insight into the deep-sea adaptive evolution of vesicomyids

Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model

(2018) Astrid Schuster et al.   BMC EVOLUTIONARY BIOLOGY

First comprehensive analysis of lysine acetylation in Alvinocaris longirostris from the deep-sea hydrothermal vents

(2018) Min Hui et al.   BMC GENOMICS

De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

(2018) Yi Lan et al.   BMC GENOMICS

Complete mitochondrial genome of the first deep-sea spongicolid shrimp Spongiocaris panglao (Decapoda: Stenopodidea): Novel gene arrangement and the phylogenetic position and origin of Stenopodidea

(2018) Shao'e Sun et al.   GENE

ORDER within the chaos: Insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements

(2018) Mun Hua Tan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative mitochondrial genomic analyses of three chemosynthetic vesicomyid clams from deep-sea habitats

(2018) Helu Liu et al.   Ecology and Evolution

Deep mitochondrial origin outside the sampled alphaproteobacteria

(2018) Joran Martijn et al.   NATURE

Complete mitochondrial genome of Benthodytes marianensis (Holothuroidea: Elasipodida: Psychropotidae): Insight into deep sea adaptation in the sea cucumber

(2018) Wendan Mu et al.   PLoS One

The first complete mitochondrial genome of the Mariana Trench Freyastera benthophila (Asteroidea: Brisingida: Brisingidae) allows insights into the deep-sea adaptive evolution of Brisingida

(2018) Wendan Mu et al.   Ecology and Evolution

Evolution of mitochondrial energy metabolism genes associated with hydrothermal vent adaption of Alvinocaridid shrimps

(2017) Zhengfei Wang et al.   Genes & Genomics

Burrowers from the Past: Mitochondrial Signatures of Ordovician Bivalve Infaunalization

(2017) Federico Plazzi et al.   Genome Biology and Evolution

Ancient Occasional Host Switching of Maternally Transmitted Bacterial Symbionts of Chemosynthetic Vesicomyid Clams

(2017) Genki Ozawa et al.   Genome Biology and Evolution

Evolved changes in the intracellular distribution and physiology of muscle mitochondria in high-altitude native deer mice

(2017) Sajeni Mahalingam et al.   JOURNAL OF PHYSIOLOGY-LONDON

Updated mitochondrial phylogeny of Pteriomorph and Heterodont Bivalvia, including deep-sea chemosymbiotic Bathymodiolus mussels, vesicomyid clams and the thyasirid clam Conchocele cf. bisecta

(2017) Genki Ozawa et al.   Marine Genomics

Insights into deep-sea adaptations and host-symbiont interactions: A comparative transcriptome study on Bathymodiolus mussels and their coastal relatives

(2017) Ping Zheng et al.   MOLECULAR ECOLOGY

The mitochondrial genome of a sea anemone Bolocera sp. exhibits novel genetic structures potentially involved in adaptation to the deep-sea environment

(2017) Bo Zhang et al.   Ecology and Evolution

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

The Complete Mitochondrial Genome of two Tetragnatha Spiders (Araneae: Tetragnathidae): Severe Truncation of tRNAs and Novel Gene Rearrangements in Araneae

(2016) Zheng-Liang Wang et al.   International Journal of Biological Sciences

Phylogeny and origins of chemosynthetic vesicomyid clams

(2016) Shannon B. Johnson et al.   SYSTEMATICS AND BIODIVERSITY

Mitogenomic perspectives on the origin of Tibetan loaches and their adaptation to high altitude

(2016) Ying Wang et al.   Scientific Reports

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes

(2015) Abdullah H. Sahyoun et al.   NUCLEIC ACIDS RESEARCH

Complete mitochondrial genome of hydrothermal vent clam Calyptogena magnifica

(2015) Helu Liu et al.   Mitochondrial DNA Part A

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Gene rearrangements in gekkonid mitochondrial genomes with shuffling, loss, and reassignment of tRNA genes

(2014) Yoshinori Kumazawa et al.   BMC GENOMICS

Mitogenomic analyses propose positive selection in mitochondrial genes for high-altitude adaptation in galliform birds

(2014) Taicheng Zhou et al.   MITOCHONDRION

Adaptive Evolution of Mitochondrial Energy Metabolism Genes Associated with Increased Energy Demand in Flying Insects

(2014) Yunxia Yang et al.   PLoS One

Thermal adaptation and clinal mitochondrial DNA variation of European anchovy

(2014) G. Silva et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The complete mitochondrial genome of Solemya velum (Mollusca: Bivalvia) and its relationships with Conchifera

(2013) Federico Plazzi et al.   BMC GENOMICS

The complete mitochondrial genome of the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae)

(2012) Fang Liao et al.   International Journal of Biological Sciences

Characterization of the Complete Mitochondrial Genomes of Cnaphalocrocis medinalis and Chilo suppressalis (Lepidoptera: Pyralidae)

(2012) Huan-Na Chai et al.   International Journal of Biological Sciences

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Phylogeny and Diversification Patterns among Vesicomyid Bivalves

(2012) Carole Decker et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Differences in mtDNA whole sequence between Tibetan and Han populations suggesting adaptive selection to high altitude

(2011) Mingliang Gu et al.   GENE

Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation

(2011) Li Yu et al.   MITOCHONDRION

Complete mitochondrial DNA sequence of Crassostrea nippona: comparative and phylogenomic studies on seven commercial Crassostrea species

(2011) Hong Yu et al.   MOLECULAR BIOLOGY REPORTS

The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection

(2011) Ivanna H. Tomasco et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Adaptive evolution of the mitochondrial ND6 gene in the domestic horse

(2010) T. Ning et al.   GENETICS AND MOLECULAR RESEARCH

The mitogenome of Paphia euglypta (Bivalvia: Veneridae) and comparative mitogenomic analyses of three venerids

(2010) Xiaodong Xu et al.   GENOME

Domestication Relaxed Selective Constraints on the Yak Mitochondrial Genome

(2010) Zhaofeng Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic diversity and connectivity of deep-sea hydrothermal vent metapopulations

(2010) ROBERT C. VRIJENHOEK   MOLECULAR ECOLOGY

Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: Insights in phylogenetic relationships of Echinodermata

(2010) Marleen Perseke et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Vesicomyidae (Bivalvia): Current Taxonomy and Distribution

(2010) Elena M. Krylova et al.   PLoS One

Adaptive evolution of energy metabolism genes and the origin of flight in bats

(2010) Y.-Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

The Mitochondrial Genomes of Two Scallops, Argopecten irradians and Chlamys farreri (Mollusca: Bivalvia): The Most Highly Rearranged Gene Order in the Family Pectinidae

(2009) Jianfeng Ren et al.   JOURNAL OF MOLECULAR EVOLUTION

The complete mitochondrial genome of the bag-shelter moth Ochrogaster lunifer (Lepidoptera, Notodontidae)

(2008) Paola Salvato et al.   BMC GENOMICS

The adaptive evolution of the mammalian mitochondrial genome

(2008) Rute R da Fonseca et al.   BMC GENOMICS

Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species

(2008) C Gissi et al.   HEREDITY

Mitochondrial genome analysis of Ochotona curzoniae and implication of cytochrome c oxidase in hypoxic adaptation

(2008) Yongjun Luo et al.   MITOCHONDRION

Hydrothermal vents and the origin of life

(2008) William Martin et al.   NATURE REVIEWS MICROBIOLOGY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY