Marine phytoplankton downregulate core photosynthesis and carbon storage genes upon rapid mixed layer shallowing

Complex marine microbial communities partition metabolism of scarce resources over the diel cycle

(2022) Daniel Muratore et al.   Nature Ecology & Evolution

Predictability of Seawater DMS During the North Atlantic Aerosol and Marine Ecosystem Study (NAAMES)

(2021) Thomas G. Bell et al.   Frontiers in Marine Science

Photoacclimation state of Thalassiosira weissflogii is not affected by changes in optical depth under a fluctuating light regime simulating deep mixing

(2021) Matthew Brown et al.   JOURNAL OF PHYCOLOGY

Seasonality of the Microbial Community Composition in the North Atlantic

(2021) Luis M. Bolaños et al.   Frontiers in Marine Science

Thoughts on the evolution and ecological niche of diatoms

(2021) Michael J. Behrenfeld et al.   ECOLOGICAL MONOGRAPHS

Rapid photoacclimation during episodic deep mixing augments the biological carbon pump

(2021) W. Bryce Penta et al.   LIMNOLOGY AND OCEANOGRAPHY

Simultaneous knockout of multiple LHCF genes using single sgRNAs and engineering of a high‐fidelity Cas9 for precise genome editing in marine algae

(2021) Amit K. Sharma et al.   PLANT BIOTECHNOLOGY JOURNAL

Light Harvesting in Fluctuating Environments: Evolution and Function of Antenna Proteins across Photosynthetic Lineage

(2021) Pushan Bag   Plants-Basel

Robust Strategy for Photoprotection in the Light-Harvesting Antenna of Diatoms: A Molecular Dynamics Study

(2021) Anthi Chrysafoudi et al.   Journal of Physical Chemistry Letters

Seasonal mixed layer depth shapes phytoplankton physiology, viral production, and accumulation in the North Atlantic

(2021) Ben P. Diaz et al.   Nature Communications

Early dynamics of photosynthetic Lhcf2 and Lhcf15 transcription and mRNA stabilities in response to herbivory-related decadienal in Phaeodactylum tricornutum

(2020) Shahima Islam et al.   Scientific Reports

Small phytoplankton dominate western North Atlantic biomass

(2020) Luis M. Bolaños et al.   ISME Journal

DMSP-Producing Bacteria Are More Abundant in the Surface Microlayer than Subsurface Seawater of the East China Sea

(2020) Hao Sun et al.   MICROBIAL ECOLOGY

MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics

(2020) Eli Levy Karin et al.   Microbiome

A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states

(2020) Chuan Ku et al.   Science Advances

Phytoplankton Community Composition Determined From Co-variability Among Phytoplankton Pigments From the NAAMES Field Campaign

(2020) Sasha J. Kramer et al.   Frontiers in Marine Science

Light Regulation of LHCX Genes in the Benthic Diatom Seminavis robusta

(2020) Lander Blommaert et al.   Frontiers in Marine Science

Net Community Production, Dissolved Organic Carbon Accumulation, and Vertical Export in the Western North Atlantic

(2020) Nicholas Baetge et al.   Frontiers in Marine Science

Mesoscale Eddies Structure Mesopelagic Communities

(2020) Alice Della Penna et al.   Frontiers in Marine Science

Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean

(2020) Kevin W. Becker et al.   ISME Journal

Temperate infection in a virus–host system previously known for virulent dynamics

(2020) Ben Knowles et al.   Nature Communications

Divergence of photosynthetic strategies amongst marine diatoms

(2020) Nerissa L. Fisher et al.   PLoS One

Coordinated downregulation of the photosynthetic apparatus as a protective mechanism against UV exposure in the diatom Corethron hystrix

(2019) Robert W. Read et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

First Viruses Infecting the Marine Diatom Guinardia delicatula

(2019) Laure Arsenieff et al.   Frontiers in Microbiology

Retardation of the Calvin Cycle Contributes to the Reduced CO2 Assimilation Ability of Rice Stripe Virus-Infected N. benthamiana and Suppresses Viral Infection

(2019) Ji’an Bi et al.   Frontiers in Microbiology

Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes

(2019) Ella T. Sieradzki et al.   Nature Communications

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

The Macromolecular Basis of Phytoplankton C:N:P Under Nitrogen Starvation

(2019) Justin D. Liefer et al.   Frontiers in Microbiology

Light harvesting complexes in chlorophyll c-containing algae

(2019) Claudia Büchel   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection

(2019) B. C. Kolody et al.   ISME Journal

Silicon limitation facilitates virus infection and mortality of marine diatoms

(2019) Chana F. Kranzler et al.   Nature Microbiology

Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters

(2019) Alice Vislova et al.   Frontiers in Microbiology

Transcriptional patterns of Emiliania huxleyi in the North Pacific Subtropical Gyre reveal the daily rhythms of its metabolic potential

(2019) María D. Hernández Limón et al.   ENVIRONMENTAL MICROBIOLOGY

Lhcx proteins provide photoprotection via thermal dissipation of absorbed light in the diatom Phaeodactylum tricornutum

(2019) Jochen M. Buck et al.   Nature Communications

Impacts of Shifts in Phytoplankton Community on Clouds and Climate via the Sulfur Cycle

(2018) Shanlin Wang et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Gene expression of indoor fungal communities under damp building conditions: Implications for human health

(2018) B. Hegarty et al.   INDOOR AIR

A virus or more in (nearly) every cell: ubiquitous networks of virus–host interactions in extreme environments

(2018) Jacob H. Munson-McGee et al.   ISME Journal

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Light regulation of coccolithophore host-virus interactions

(2018) Kimberlee Thamatrakoln et al.   NEW PHYTOLOGIST

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

Daily changes in phytoplankton lipidomes reveal mechanisms of energy storage in the open ocean

(2018) Kevin W. Becker et al.   Nature Communications

Student's tutorial on bloom hypotheses in the context of phytoplankton annual cycles

(2017) Michael J. Behrenfeld et al.   GLOBAL CHANGE BIOLOGY

Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery

(2017) Jozef I. Nissimov et al.   Viruses-Basel

Responses of the picoprasinophyte Micromonas commoda to light and ultraviolet stress

(2017) Marie L. Cuvelier et al.   PLoS One

Advantageous characteristics of the diatom Chaetoceros gracilis as a sustainable biofuel producer

(2016) Hiromi Tokushima et al.   Biotechnology for Biofuels

High light stress triggers distinct proteomic responses in the marine diatom Thalassiosira pseudonana

(2016) Hong-Po Dong et al.   BMC GENOMICS

Viruses Inhibit CO 2 Fixation in the Most Abundant Phototrophs on Earth

(2016) Richard J. Puxty et al.   CURRENT BIOLOGY

Multisignal control of expression of the LHCX protein family in the marine diatomPhaeodactylum tricornutum

(2016) Lucilla Taddei et al.   JOURNAL OF EXPERIMENTAL BOTANY

Substantial energy input to the mesopelagic ecosystem from the seasonal mixed-layer pump

(2016) Giorgio Dall'Olmo et al.   Nature Geoscience

Seasonality, phytoplankton succession and the biogeochemical impacts of an autumn storm in the northeast Atlantic Ocean

(2016) Stuart C. Painter et al.   PROGRESS IN OCEANOGRAPHY

Phytoplankton Strategies for Photosynthetic Energy Allocation

(2015) Kimberly H. Halsey et al.   Annual Review of Marine Science

Phytoplankton community structure in relation to vertical stratification along a north-south gradient in the Northeast Atlantic Ocean

(2015) Kristina D. A. Mojica et al.   LIMNOLOGY AND OCEANOGRAPHY

Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae

(2015) Mario Giordano et al.   PLANT CELL AND ENVIRONMENT

Microbial community transcriptional networks are conserved in three domains at ocean basin scales

(2015) Frank O. Aylward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral activation of cellular metabolism

(2015) Erica L. Sanchez et al.   VIROLOGY

Inferred support for disturbance-recovery hypothesis of North Atlantic phytoplankton blooms

(2015) Matthew J. Smith et al.   JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS

Discovery of Two Novel Viruses Expands the Diversity of Single-Stranded DNA and Single-Stranded RNA Viruses Infecting a Cosmopolitan Marine Diatom

(2014) Kei Kimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages

(2014) E. A. Ottesen et al.   SCIENCE

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

(2014) Patrick J. Keeling et al.   PLOS BIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Genome-wide diel growth state transitions in the diatom Thalassiosira pseudonana

(2013) J. Ashworth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of several sub-populations in the pool of light harvesting proteins in the pennate diatom Phaeodactylum tricornutum

(2012) Kathi Gundermann et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

First evidence for the existence of pennate diatom viruses

(2012) Yuji Tomaru et al.   ISME Journal

The photoprotective molecular switch in the photosystem II antenna

(2011) Alexander V. Ruban et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Karlodinium veneficum—The little dinoflagellate with a big bite

(2011) Allen R. Place et al.   HARMFUL ALGAE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Microbial sources of intact polar diacylglycerolipids in the Western North Atlantic Ocean

(2011) Kimberly J. Popendorf et al.   ORGANIC GEOCHEMISTRY

Dinoflagellate Genome Evolution

(2010) Jennifer H. Wisecaver et al.   Annual Review of Microbiology

Photoprotection in the diatom Thalassiosira pseudonana: Role of LI818-like proteins in response to high light stress

(2010) Song-Hua Zhu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

Biotic stress globally downregulates photosynthesis genes

(2010) DAMLA D. BILGIN et al.   PLANT CELL AND ENVIRONMENT

Phytoplankton in a changing world: cell size and elemental stoichiometry

(2009) Z. V. Finkel et al.   JOURNAL OF PLANKTON RESEARCH

Dynamic response of the transcriptome of a psychrophilic diatom, Chaetoceros neogracile, to high irradiance

(2009) Seunghye Park et al.   PLANTA

An Integrated Analysis of Molecular Acclimation to High Light in the Marine Diatom Phaeodactylum tricornutum

(2009) Marianne Nymark et al.   PLoS One

Sensing and Responding to Excess Light

(2008) Zhirong Li et al.   Annual Review of Plant Biology