A single-cell view on alga-virus interactions reveals sequential transcriptional programs and infection states

Influence of light on the infection of Aureococcus anophagefferens CCMP 1984 by a “giant virus”

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In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids

(2019) Guy Schleyer et al.   Nature Microbiology

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

(2019) Ann C. Gregory et al.   CELL

MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing

(2019) Hadas Keren-Shaul et al.   Nature Protocols

Unmasking cellular response of a bloom-forming alga to viral infection by resolving expression profiles at a single-cell level

(2019) Shilo Rosenwasser et al.   PLoS Pathogens

Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program

(2019) Emanuel Wyler et al.   Nature Communications

Expression profiling of host and virus during a coccolithophore bloom provides insights into the role of viral infection in promoting carbon export

(2018) Uri Sheyn et al.   ISME Journal

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Extreme heterogeneity of influenza virus infection in single cells

(2018) Alistair B Russell et al.   eLife

Coccolithovirus facilitation of carbon export in the North Atlantic

(2018) Christien P. Laber et al.   Nature Microbiology

Light regulation of coccolithophore host-virus interactions

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The Gene Ontology Resource: 20 years and still GOing strong

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Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue

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Bacterial virulence against an oceanic bloom-forming phytoplankter is mediated by algal DMSP

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Multisubunit DNA-Dependent RNA Polymerases from Vaccinia Virus and Other Nucleocytoplasmic Large-DNA Viruses: Impressions from the Age of Structure

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Scaling single-cell genomics from phenomenology to mechanism

(2017) Amos Tanay et al.   NATURE

Giant viruses with an expanded complement of translation system components

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Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery

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Communication via extracellular vesicles enhances viral infection of a cosmopolitan alga

(2017) Daniella Schatz et al.   Nature Microbiology

Modulation of host ROS metabolism is essential for viral infection of a bloom-forming coccolithophore in the ocean

(2016) Uri Sheyn et al.   ISME Journal

Viral serine palmitoyltransferase induces metabolic switch in sphingolipid biosynthesis and is required for infection of a marine alga

(2016) Carmit Ziv et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean

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Standing on the Shoulders of Giant Viruses: Five Lessons Learned about Large Viruses Infecting Small Eukaryotes and the Opportunities They Create

(2016) Steven W. Wilhelm et al.   PLoS Pathogens

The Technology and Biology of Single-Cell RNA Sequencing

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Database resources of the National Center for Biotechnology Information

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Rewiring Host Lipid Metabolism by Large Viruses Determines the Fate of Emiliania huxleyi, a Bloom-Forming Alga in the Ocean

(2014) S. Rosenwasser et al.   PLANT CELL

Deep RNA Sequencing Reveals Hidden Features and Dynamics of Early Gene Transcription in Paramecium bursaria Chlorella Virus 1

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Pan genome of the phytoplankton Emiliania underpins its global distribution

(2013) Betsy A. Read et al.   NATURE

Comparing thousands of circular genomes using the CGView Comparison Tool

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Draft Genome Sequence of the Coccolithovirus Emiliania huxleyi Virus 202

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DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus

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Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin

(2010) Tilman Schneider-Poetsch et al.   Nature Chemical Biology

phyloXML: XML for evolutionary biology and comparative genomics

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BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Viral Glycosphingolipids Induce Lytic Infection and Cell Death in Marine Phytoplankton

(2009) A. Vardi et al.   SCIENCE

Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution

(2009) Natalya Yutin et al.   Virology Journal

Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

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