Seasonality of the Microbial Community Composition in the North Atlantic

Different carboxyl‐rich alicyclic molecules proxy compounds select distinct bacterioplankton for oxidation of dissolved organic matter in the mesopelagic Sargasso Sea

(2020) Shuting Liu et al.   LIMNOLOGY AND OCEANOGRAPHY

Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria

(2020) Jimmy H. W. Saw et al.   mBio

Small phytoplankton dominate western North Atlantic biomass

(2020) Luis M. Bolaños et al.   ISME Journal

Tara Oceans: towards global ocean ecosystems biology

(2020) Shinichi Sunagawa et al.   NATURE REVIEWS MICROBIOLOGY

Phytoplankton Community Composition Determined From Co-variability Among Phytoplankton Pigments From the NAAMES Field Campaign

(2020) Sasha J. Kramer et al.   Frontiers in Marine Science

Net Community Production, Dissolved Organic Carbon Accumulation, and Vertical Export in the Western North Atlantic

(2020) Nicholas Baetge et al.   Frontiers in Marine Science

Mesoscale Eddies Structure Mesopelagic Communities

(2020) Alice Della Penna et al.   Frontiers in Marine Science

Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans

(2020) Chang Jae Choi et al.   Frontiers in Microbiology

Stable Isotope Probing Identifies Bacterioplankton Lineages Capable of Utilizing Dissolved Organic Matter Across a Range of Bioavailability

(2020) Shuting Liu et al.   Frontiers in Microbiology

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

(2019) Tom O Delmont et al.   eLife

Ecogenomics of the SAR11 clade

(2019) Jose M. Haro‐Moreno et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in phytoplankton community structure modify bacterial production, abundance and community composition

(2018) MT Camarena-Gómez et al.   AQUATIC MICROBIAL ECOLOGY

Spatiotemporal dynamics of marine bacterial and archaeal communities in surface waters off the northern Antarctic Peninsula

(2018) Camila N. Signori et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Depth-Resolved Distribution of Particle-Attached and Free-Living Bacterial Communities in the Water Column of the New Britain Trench

(2018) Rulong Liu et al.   Frontiers in Microbiology

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

Student's tutorial on bloom hypotheses in the context of phytoplankton annual cycles

(2017) Michael J. Behrenfeld et al.   GLOBAL CHANGE BIOLOGY

Marine Bacterioplankton Seasonal Succession Dynamics

(2017) Carina Bunse et al.   TRENDS IN MICROBIOLOGY

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

(2017) Zachary Landry et al.   mBio

Seasonal Shifts in Bacterial Community Responses to Phytoplankton-Derived Dissolved Organic Matter in the Western Antarctic Peninsula

(2017) Catherine M. Luria et al.   Frontiers in Microbiology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

New nutrients exert fundamental control on dissolved organic carbon accumulation in the surface Atlantic Ocean

(2016) Cristina Romera-Castillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expanding the World of Marine Bacterial and Archaeal Clades

(2016) Pelin Yilmaz et al.   Frontiers in Microbiology

Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom

(2016) David M. Needham et al.   Nature Microbiology

Low diversity of planktonic bacteria in the tropical ocean

(2016) Mathias Milici et al.   Scientific Reports

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean

(2015) Sebastian Sudek et al.   ENVIRONMENTAL MICROBIOLOGY

Shifts in bacterial community composition associated with increased carbon cycling in a mosaic of phytoplankton blooms

(2015) Marine Landa et al.   ISME Journal

Synchronous shifts in dissolved organic carbon bioavailability and bacterial community responses over the course of an upwelling-driven phytoplankton bloom

(2015) Emma K. Wear et al.   LIMNOLOGY AND OCEANOGRAPHY

Roles of diatom nutrient stress and species identity in determining the short- and long-term bioavailability of diatom exudates to bacterioplankton

(2015) Emma K. Wear et al.   MARINE CHEMISTRY

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Dissolved organic matter (DOM) release by phytoplankton in the contemporary and future ocean

(2014) Daniel C.O. Thornton   EUROPEAN JOURNAL OF PHYCOLOGY

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

(2014) Jacob A Cram et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

The Biological Carbon Pump in the North Atlantic

(2014) Richard Sanders et al.   PROGRESS IN OCEANOGRAPHY

Community differentiation and population enrichment of Sargasso Sea bacterioplankton in the euphotic zone of a mesoscale mode-water eddy

(2013) Craig E. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages

(2013) Craig E Nelson et al.   ISME Journal

High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences

(2013) Kevin L Vergin et al.   ISME Journal

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Export and mesopelagic particle flux during a North Atlantic spring diatom bloom

(2011) Patrick Martin et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect

(2011) Amy R. Kirkham et al.   ENVIRONMENTAL MICROBIOLOGY

Dissolved Organic Matter in the Ocean: A Controversy Stimulates New Insights

(2011) Dennis Hansell et al.   OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

A Holistic Approach to Marine Eco-Systems Biology

(2011) Eric Karsenti et al.   PLOS BIOLOGY

Dissolved organic carbon export and subsequent remineralization in the mesopelagic and bathypelagic realms of the North Atlantic basin

(2010) Craig A. Carlson et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Increasing importance of small phytoplankton in a warmer ocean

(2009) XOSÉ ANXELU G. MORÁN et al.   GLOBAL CHANGE BIOLOGY

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal