Coordinated downregulation of the photosynthetic apparatus as a protective mechanism against UV exposure in the diatom Corethron hystrix

Current trends to comprehend lipid metabolism in diatoms

(2018) Nodumo Nokulunga Zulu et al.   PROGRESS IN LIPID RESEARCH

Expansion of the Gene Ontology knowledgebase and resources

(2016)   NUCLEIC ACIDS RESEARCH

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Structural Coupling of Extrinsic Proteins with the Oxygen-Evolving Center in Photosystem II

(2016) Kentaro Ifuku et al.   Frontiers in Plant Science

Ultraviolet-B Radiation (UV-B) Relieves Chilling-Light-Induced PSI Photoinhibition And Accelerates The Recovery Of CO2 Assimilation In Cucumber (Cucumis sativus L.) Leaves

(2016) Zi-Shan Zhang et al.   Scientific Reports

Molecular basis of chromatic adaptation in pennate diatom Phaeodactylum tricornutum

(2015) Miroslava Herbstová et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Physiological response of marine centric diatoms to ultraviolet radiation, with special reference to cell size

(2015) Yaping Wu et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Regulation of Photosynthesis during Abiotic Stress-Induced Photoinhibition

(2015) Mayank Anand Gururani et al.   Molecular Plant

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

UV-Induced Cell Death in Plants

(2013) Ganesh Nawkar et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rubisco: still the most abundant protein of Earth?

(2013) John A. Raven   NEW PHYTOLOGIST

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana

(2012) Roshan Shrestha et al.   BMC GENOMICS

Direct estimation of functional PSII reaction center concentration and PSII electron flux on a volume basis: a new approach to the analysis of Fast Repetition Rate fluorometry (FRRf) data

(2012) Kevin Oxborough et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response

(2012) Sonya T. Dyhrman et al.   PLoS One

Response of the Diatom Phaeodactylum tricornutum to Photooxidative Stress Resulting from High Light Exposure

(2012) Nuno Domingues et al.   PLoS One

Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability

(2012) A. Marchetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular functions of PsbP and PsbQ proteins in the photosystem II supercomplex

(2011) Kentaro Ifuku et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Morphological adaptation of a planktonic diatom to growth in Antarctic sea ice

(2011) Ryszard Ligowski et al.   MARINE BIOLOGY

Reduced ultraviolet-induced DNA damage and apoptosis in human skin with topical application of a photolyase-containing DNA repair enzyme cream: Clues to skin cancer prevention

(2011) Enzo Emanuele   Molecular Medicine Reports

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

Effects of UV radiation on the structure of Arctic macrobenthic communities

(2011) A. Fricke et al.   POLAR BIOLOGY

The Clp protease system; a central component of the chloroplast protease network

(2010) Paul Dominic B. Olinares et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Biotic stress globally downregulates photosynthesis genes

(2010) DAMLA D. BILGIN et al.   PLANT CELL AND ENVIRONMENT

Signal Transduction in Responses to UV-B Radiation

(2009) Gareth I. Jenkins   Annual Review of Plant Biology

Contributions of anoxygenic and oxygenic phototrophy and chemolithotrophy to carbon and oxygen fluxes in aquatic environments

(2009) JA Raven   AQUATIC MICROBIAL ECOLOGY

Diatom PtCPF1 is a new cryptochrome/photolyase family member with DNA repair and transcription regulation activity

(2009) Sacha Coesel et al.   EMBO REPORTS

The life of diatoms in the world's oceans

(2009) E. Virginia Armbrust   NATURE

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

PHOTOINHIBITION OF PSII INEMILIANIA HUXLEYI(HAPTOPHYTA) UNDER HIGH LIGHT STRESS: THE ROLES OF PHOTOACCLIMATION, PHOTOPROTECTION, AND PHOTOREPAIR

(2008) Maria Ragni et al.   JOURNAL OF PHYCOLOGY

Response of Antarctic phytoplankton to solar UVR exposure: inhibition and recovery of photosynthesis in coastal and pelagic assemblages

(2008) JJ Fritz et al.   MARINE ECOLOGY PROGRESS SERIES

Interpretation of fast repetition rate (FRR) fluorescence: signatures of phytoplankton community structure versus physiological state

(2008) DJ Suggett et al.   MARINE ECOLOGY PROGRESS SERIES

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

(2008) A. E. Allen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA