Gene expression of indoor fungal communities under damp building conditions: Implications for human health

How to normalize metatranscriptomic count data for differential expression analysis

(2017) Heiner Klingenberg et al.   PeerJ

Fungal and bacterial growth in floor dust at elevated relative humidity levels

(2016) K. C. Dannemiller et al.   INDOOR AIR

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Impact of urban air pollution on the allergenicity of Aspergillus fumigatus conidia: Outdoor exposure study supported by laboratory experiments

(2016) Naama Lang-Yona et al.   SCIENCE OF THE TOTAL ENVIRONMENT

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality

(2016) Yue Jiang et al.   Microbiome

Prospects and challenges for fungal metatranscriptomics of complex communities

(2015) Cheryl R. Kuske et al.   Fungal Ecology

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

The transcriptional response of microbial communities in thawing Alaskan permafrost soils

(2015) Marco J. L. Coolen et al.   Frontiers in Microbiology

Update of the WHO/IUIS Allergen Nomenclature Database based on analysis of allergen sequences

(2014) C. Radauer et al.   ALLERGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

RNA-Seq-Based Transcriptome Analysis of Aflatoxigenic Aspergillus flavus in Response to Water Activity

(2014) Feng Zhang et al.   Toxins

Morphological responses to high sugar concentrations differ from adaptation to high salt concentrations in the xerophilic fungi Wallemia spp.

(2013) Marjetka Kralj Kunčič et al.   Fungal Biology

Evaluation of Assembly Strategies Using RNA-Seq Data Associated with Grain Development of Wheat (Triticum aestivum L.)

(2013) Huai-Zhu Li et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

(2012) Mahajabeen Padamsee et al.   FUNGAL GENETICS AND BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Fungal volatile organic compounds: A review with emphasis on their biotechnological potential

(2012) Shannon U. Morath et al.   Fungal Biology Reviews

Associations between Fungal Species and Water-Damaged Building Materials

(2011) Birgitte Andersen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

Molecular profiling of fungal communities in moisture damaged buildings before and after remediation - a comparison of culture-dependent and culture-independent methods

(2011) Miia Pitkäranta et al.   BMC MICROBIOLOGY

Respiratory and Allergic Health Effects of Dampness, Mold, and Dampness-Related Agents: A Review of the Epidemiologic Evidence

(2011) Mark J. Mendell et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

The allergenicity of Aspergillus fumigatus conidia is influenced by growth temperature

(2011) Swee Yang Low et al.   Fungal Biology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

iPath2.0: interactive pathway explorer

(2011) Takuji Yamada et al.   NUCLEIC ACIDS RESEARCH

Elevated Atmospheric Carbon Dioxide Concentrations Amplify Alternaria alternata Sporulation and Total Antigen Production

(2010) Julie Wolf et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Effect of water activity on the production of volatile organic compounds by Muscodor albus and their effect on three pathogens in stored potato

(2010) Ronan Corcuff et al.   Fungal Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Control of high osmolarity signalling in the yeast Saccharomyces cerevisiae

(2009) Stefan Hohmann   FEBS LETTERS

Halotolerant and halophilic fungi

(2009) Nina Gunde-Cimerman et al.  

AmiGO: online access to ontology and annotation data

(2008) Seth Carbon et al.   BIOINFORMATICS

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One