Association of SARS-CoV-2 and Polypharmacy with Gut–Lung Axis: From Pathogenesis to Treatment

Gut microbiota dynamics in a prospective cohort of patients with post-acute COVID-19 syndrome

(2022) Qin Liu et al.   GUT

Critically ill patients with COVID-19 show lung fungal dysbiosis with reduced microbial diversity in Candida spp colonized patients

(2022) Elisa Viciani et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

The impact of COVID-19 on the comorbidities: A review of recent updates for combating it

(2022) Jonaid Ahmad Malik et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

The SARS-CoV-2 mutations versus vaccine effectiveness: New opportunities to new challenges

(2022) Jonaid Ahmad Malik et al.   Journal of Infection and Public Health

The Fungal Gut Microbiome Exhibits Reduced Diversity and Increased Relative Abundance of Ascomycota in Severe COVID-19 Illness and Distinct Interconnected Communities in SARS-CoV-2 Positive Patients

(2022) Johanna Reinold et al.   Frontiers in Cellular and Infection Microbiology

SARS-CoV-2 vaccines: Clinical endpoints and psychological perspectives: A literature review

(2022) Jonaid Ahmad Malik et al.   Journal of Infection and Public Health

Clinical Characteristics and Treatment Outcomes of Mild to Moderate COVID-19 Patients at Tertiary Care Hospital, Al Baha, Saudi Arabia: A Single Centre Study

(2022) Mohammad Albanghali et al.   Journal of Infection and Public Health

Gut microbiota composition reflects disease severity and dysfunctional immune responses in patients with COVID-19

(2021) Yun Kit Yeoh et al.   GUT

The lung–gut axis during viral respiratory infections: the impact of gut dysbiosis on secondary disease outcomes

(2021) Valentin Sencio et al.   Mucosal Immunology

Massive expansion of human gut bacteriophage diversity

(2021) Luis F. Camarillo-Guerrero et al.   CELL

Interplay between severities of COVID-19 and the gut microbiome: implications of bacterial co-infections?

(2021) Jyoti Chhibber-Goel et al.   Gut Pathogens

Investigation of Nasal/Oropharyngeal Microbial Community of COVID-19 Patients by 16S rDNA Sequencing

(2021) Martina Rueca et al.   International Journal of Environmental Research and Public Health

Microbiota Modulation of the Gut-Lung Axis in COVID-19

(2021) Gislane Lelis Vilela de Oliveira et al.   Frontiers in Immunology

Probiotics in Prevention and Treatment of COVID-19: Current Perspective and Future Prospects

(2021) Shilia Jacob Kurian et al.   ARCHIVES OF MEDICAL RESEARCH

Targets and strategies for vaccine development against SARS-CoV-2

(2021) Jonaid Ahmad Malik et al.   BIOMEDICINE & PHARMACOTHERAPY

Gut microbiota, inflammation and molecular signatures of host response to infection

(2021) Wanglong Gou et al.   Journal of Genetics and Genomics

Gut mycobiota alterations in patients with COVID-19 and H1N1 infections and their associations with clinical features

(2021) Longxian Lv et al.   Communications Biology

A catalog of tens of thousands of viruses from human metagenomes reveals hidden associations with chronic diseases

(2021) Michael J. Tisza et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Profiling of Oral Microbiota and Cytokines in COVID-19 Patients

(2021) Valerio Iebba et al.   Frontiers in Microbiology

An overview of SARS-COV-2 epidemiology, mutant variants, vaccines, and management strategies

(2021) Tahmeena Farooqi et al.   Journal of Infection and Public Health

Probiotics as Adjunctive Treatment for Patients Contracted COVID-19: Current Understanding and Future Needs

(2021) Jiangying Peng et al.   Frontiers in Nutrition

The volatile and heterogeneous gut microbiota shifts of COVID‐19 patients over the course of a probiotics‐assisted therapy

(2021) Chunyan Wu et al.   Clinical and Translational Medicine

Probiotics for the Prevention of Ventilator-Associated Pneumonia: A Meta-Analysis of Randomized Controlled Trials

(2020) Minmin Su et al.   Respiratory Care

Virus interactions with bacteria: Partners in the infectious dance

(2020) Ursula Neu et al.   PLoS Pathogens

Clinical course and outcomes of critically ill patients with SARS-CoV-2 pneumonia in Wuhan, China: a single-centered, retrospective, observational study

(2020) Xiaobo Yang et al.   Lancet Respiratory Medicine

COVID-19 in older people: a rapid clinical review

(2020) Fiona E Lithander et al.   AGE AND AGEING

Review article: gastrointestinal features in COVID-19 and the possibility of faecal transmission

(2020) Yuan Tian et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Emergency room neurology in times of COVID‐19: malignant ischaemic stroke and SARS‐CoV‐2 infection

(2020) T. González‐Pinto et al.   EUROPEAN JOURNAL OF NEUROLOGY

Alterations in Gut Microbiota of Patients With COVID-19 During Time of Hospitalization

(2020) Tao Zuo et al.   GASTROENTEROLOGY

Gastrointestinal Manifestations of SARS-CoV-2 Infection and Virus Load in Fecal Samples from the Hong Kong Cohort and Systematic Review and Meta-analysis

(2020) Ka Shing Cheung et al.   GASTROENTEROLOGY

Respiratory microbiome and epithelial interactions shape immunity in the lungs

(2020) Rachele Invernizzi et al.   IMMUNOLOGY

COVID-19 illness in native and immunosuppressed states: A clinical–therapeutic staging proposal

(2020) Hasan K. Siddiqi et al.   JOURNAL OF HEART AND LUNG TRANSPLANTATION

Gut–organ axis: A microbial outreach and networking

(2020) Shruti Ahlawat et al.   LETTERS IN APPLIED MICROBIOLOGY

Alterations of the Gut Microbiota in Patients With Coronavirus Disease 2019 or H1N1 Influenza

(2020) Silan Gu et al.   CLINICAL INFECTIOUS DISEASES

Alterations in Fecal Fungal Microbiome of Patients With COVID-19 During Time of Hospitalization until Discharge

(2020) Tao Zuo et al.   GASTROENTEROLOGY

Depicting SARS-CoV-2 faecal viral activity in association with gut microbiota composition in patients with COVID-19

(2020) Tao Zuo et al.   GUT

Probiotics and Covid-19

(2020) Benedetta Bottari et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION

Gut microbiota and Covid-19- possible link and implications

(2020) Debojyoti Dhar et al.   VIRUS RESEARCH

Clinical Significance of the Correlation between Changes in the Major Intestinal Bacteria Species and COVID-19 Severity

(2020) Lingling Tang et al.   Engineering

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

(2020) René L Warren et al.   BIOINFORMATICS

Probiotics at War Against Viruses: What Is Missing From the Picture?

(2020) Santosh Kumar Tiwari et al.   Frontiers in Microbiology

Paracetamol-Induced Glutathione Consumption: Is There a Link With Severe COVID-19 Illness?

(2020) Piero Sestili et al.   Frontiers in Pharmacology

COVID-19-Associated Candidiasis (CAC): An Underestimated Complication in the Absence of Immunological Predispositions?

(2020) Amir Arastehfar et al.   Journal of Fungi

Gut Microbiota Status in COVID-19: An Unrecognized Player?

(2020) Sabrina Donati Zeppa et al.   Frontiers in Cellular and Infection Microbiology

Morbidity and mortality of candidaemia in Europe: an epidemiologic meta-analysis

(2019) P. Koehler et al.   CLINICAL MICROBIOLOGY AND INFECTION

Cutting Edge: Probiotics and Fecal Microbiota Transplantation in Immunomodulation

(2019) Wenjie Zeng et al.   Journal of Immunology Research

Microbiota and Its Role on Viral Evasion: Is It With Us or Against Us?

(2019) Carolina Domínguez-Díaz et al.   Frontiers in Cellular and Infection Microbiology

The gut microbiome and metabolic syndrome

(2019) Kruttika Dabke et al.   JOURNAL OF CLINICAL INVESTIGATION

Peptidoglycan associated cyclic lipopeptide disrupts viral infectivity

(2019) Bryan A. Johnson et al.   JOURNAL OF VIROLOGY

The influence of the microbiome on respiratory health

(2019) Tomasz P. Wypych et al.   NATURE IMMUNOLOGY

Lower Airway Microbiota

(2019) Giulio Pulvirenti et al.   Frontiers in Pediatrics

Glucorticoid‐induced obesity individuals have distinct signatures of the gut microbiome

(2019) Dongxu Qiu et al.   BIOFACTORS

Lung transcriptional unresponsiveness and loss of early influenza virus control in infected neonates is prevented by intranasal Lactobacillus rhamnosus GG

(2019) Ogan K. Kumova et al.   PLoS Pathogens

Involvement of the Gut Microbiota and Barrier Function in Glucocorticoid‐Induced Osteoporosis

(2019) Jonathan D Schepper et al.   JOURNAL OF BONE AND MINERAL RESEARCH

Microbiota–drug interactions: Impact on metabolism and efficacy of therapeutics

(2018) Ellen M. Wilkinson et al.   MATURITAS

The Virome and Its Major Component, Anellovirus, a Convoluted System Molding Human Immune Defenses and Possibly Affecting the Development of Asthma and Respiratory Diseases in Childhood

(2018) Giulia Freer et al.   Frontiers in Microbiology

Current treatment options and the role of peptides as potential therapeutic components for Middle East Respiratory Syndrome (MERS): A review

(2018) Sabeena Mustafa et al.   Journal of Infection and Public Health

The role of the lung microbiota and the gut-lung axis in respiratory infectious diseases

(2018) Alexia Dumas et al.   CELLULAR MICROBIOLOGY

Mouse Microbiota Models: Comparing Germ-Free Mice and Antibiotics Treatment as Tools for Modifying Gut Bacteria

(2018) Elizabeth A. Kennedy et al.   Frontiers in Physiology

A single-cell survey of the small intestinal epithelium

(2017) Adam L. Haber et al.   NATURE

Host and viral traits predict zoonotic spillover from mammals

(2017) Kevin J. Olival et al.   NATURE

The lung is a site of platelet biogenesis and a reservoir for haematopoietic progenitors

(2017) Emma Lefrançais et al.   NATURE

Role of microbiota on lung homeostasis and diseases

(2017) Jian Wang et al.   Science China-Life Sciences

The Vaginal Microbiome and its Potential to Impact Efficacy of HIV Pre-exposure Prophylaxis for Women

(2017) Jennifer Velloza et al.   Current HIV/AIDS Reports

Intestinal microbiome in children with severe and complicated acute viral gastroenteritis

(2017) Shih-Yen Chen et al.   Scientific Reports

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients

(2017) Andrea Ticinesi et al.   Scientific Reports

Heat-killed Lactobacillus casei confers broad protection against influenza A virus primary infection and develops heterosubtypic immunity against future secondary infection

(2017) Yu-Jin Jung et al.   Scientific Reports

Metagenomics and the Human Virome in Asymptomatic Individuals

(2016) Nicolás Rascovan et al.   Annual Review of Microbiology

The Microbiome and the Respiratory Tract

(2016) Robert P. Dickson et al.   Annual Review of Physiology

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

(2016) Daniel J Klionsky et al.   Autophagy

The roles and functional mechanisms of interleukin-17 family cytokines in mucosal immunity

(2016) Xinyang Song et al.   Cellular & Molecular Immunology

Transkingdom control of viral infection and immunity in the mammalian intestine

(2016) J. K. Pfeiffer et al.   SCIENCE

Innate recognition of microbial-derived signals in immunity and inflammation

(2016) Yue Zhang et al.   Science China-Life Sciences

Antiviral effect of vitamin A on norovirus infection via modulation of the gut microbiome

(2016) Heetae Lee et al.   Scientific Reports

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

Competition between DNA methylation and transcription factors determines binding of NRF1

(2015) Silvia Domcke et al.   NATURE

The lung mycobiome: an emerging field of the human respiratory microbiome

(2015) Linh D. N. Nguyen et al.   Frontiers in Microbiology

Abnormal Weight Gain and Gut Microbiota Modifications Are Side Effects of Long-Term Doxycycline and Hydroxychloroquine Treatment

(2014) Emmanouil Angelakis et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

B lymphocytes regulate airway granulocytic inflammation and cytokine production in a murine model of fungal allergic asthma

(2014) Sumit Ghosh et al.   Cellular & Molecular Immunology

Impaired CTLA-4 responses in COPD are associated with systemic inflammation

(2014) Dino BA Tan et al.   Cellular & Molecular Immunology

Commensal Gram-positive bacteria initiates colitis by inducing monocyte/macrophage mobilization

(2014) Y Nakanishi et al.   Mucosal Immunology

Lung microbiota promotes tolerance to allergens in neonates via PD-L1

(2014) Eva S Gollwitzer et al.   NATURE MEDICINE

A Comparison between Droplet Digital and Quantitative PCR in the Analysis of Bacterial 16S Load in Lung Tissue Samples from Control and COPD GOLD 2

(2014) Marc A. Sze et al.   PLoS One

The gut microbiota and inflammatory bowel disease

(2014) Katsuyoshi Matsuoka et al.   Seminars in Immunopathology

Analysis of the bacterial community in chronic obstructive pulmonary disease sputum samples by denaturing gradient gel electrophoresis and real-time PCR

(2014) Dachang Wu et al.   BMC Pulmonary Medicine

Viruses and the Microbiota

(2014) Christopher M. Robinson et al.   Annual Review of Virology

Ecology, evolution and classification of bat coronaviruses in the aftermath of SARS

(2013) Jan Felix Drexler et al.   ANTIVIRAL RESEARCH

Individual NSAIDs and Upper Gastrointestinal Complications

(2013) Jordi Castellsague et al.   DRUG SAFETY

Dual role of commensal bacteria in viral infections

(2013) Jessica Wilks et al.   IMMUNOLOGICAL REVIEWS

Bacterial Coinfection in Influenza

(2013) Daniel S. Chertow et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Lactobacillus plantarum DK119 as a Probiotic Confers Protection against Influenza Virus by Modulating Innate Immunity

(2013) Min-Kyung Park et al.   PLoS One

Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ

(2013) Caitriona M. Guinane et al.   Therapeutic Advances in Gastroenterology

Commensal Bacteria Calibrate the Activation Threshold of Innate Antiviral Immunity

(2012) Michael C. Abt et al.   IMMUNITY

Asthma-associated differences in microbial composition of induced sputum

(2012) Pradeep Reddy Marri et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Results of antibiotic susceptibility testing do not influence clinical outcome in children with cystic fibrosis

(2012) M.N. Hurley et al.   Journal of Cystic Fibrosis

Microbiota-induced IL-1β, but not IL-6, is critical for the development of steady-state TH17 cells in the intestine

(2012) Michael H. Shaw et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Evolution of virulence in opportunistic pathogens: generalism, plasticity, and control

(2012) Sam P. Brown et al.   TRENDS IN MICROBIOLOGY

Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

(2011) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Trained Immunity: A Memory for Innate Host Defense

(2011) Mihai G. Netea et al.   Cell Host & Microbe

Pulmonary exacerbations in cystic fibrosis

(2011) Antine E. Stenbit et al.   CURRENT OPINION IN PULMONARY MEDICINE

Exposure to Environmental Microorganisms and Childhood Asthma

(2011) Markus J. Ege et al.   NEW ENGLAND JOURNAL OF MEDICINE

Microbiota regulates immune defense against respiratory tract influenza A virus infection

(2011) T. Ichinohe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intestinal Microbiota Promote Enteric Virus Replication and Systemic Pathogenesis

(2011) S. K. Kuss et al.   SCIENCE

Airway immune homeostasis and implications for influenza-induced inflammation

(2011) Robert J Snelgrove et al.   TRENDS IN IMMUNOLOGY

Peptide inhibition of human cytomegalovirus infection

(2011) Lilia I Melnik et al.   Virology Journal

Interkingdom crosstalk

(2011) Michail H. Karavolos et al.   Virulence

Restricted Microbiota and Absence of Cognate TCR Antigen Leads to an Unbalanced Generation of Th17 Cells

(2010) M. Lochner et al.   JOURNAL OF IMMUNOLOGY

Intranasal administration of Lactobacillus rhamnosus GG protects mice from H1N1 influenza virus infection by regulating respiratory immune responses

(2010) G. Harata et al.   LETTERS IN APPLIED MICROBIOLOGY

Disordered Microbial Communities in Asthmatic Airways

(2010) Markus Hilty et al.   PLoS One

Immune homeostasis in the respiratory tract and its impact on heterologous infection

(2009) Erika Wissinger et al.   SEMINARS IN IMMUNOLOGY

TGF-β: A Master of All T Cell Trades

(2008) Ming O. Li et al.   CELL

Inter-kingdom signalling: communication between bacteria and their hosts

(2008) David T. Hughes et al.   NATURE REVIEWS MICROBIOLOGY

The Aedes aegypti Toll Pathway Controls Dengue Virus Infection

(2008) Zhiyong Xi et al.   PLoS Pathogens