Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

(2011) John R. Erb-Downward et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Homeostasis and Inflammation in the Intestine

(2010) Wendy S. Garrett et al.   CELL

A poke into the diversity and associations within human anterior nare microbial communities

(2010) Melissa L Wos-Oxley et al.   ISME Journal

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Disordered Microbial Communities in Asthmatic Airways

(2010) Markus Hilty et al.   PLoS One

The Human Nasal Microbiota and Staphylococcus aureus Carriage

(2010) Daniel N. Frank et al.   PLoS One

Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers

(2010) Emily S. Charlson et al.   PLoS One

A Catalog of Reference Genomes from the Human Microbiome

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PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The intestinal microbiota in health and disease: the influence of microbial products on immune cell homeostasis

(2009) Michael C Abt et al.   CURRENT OPINION IN GASTROENTEROLOGY

Diversity and site-specificity of the oral microflora in the elderly

(2009) D. Preza et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The NIH Human Microbiome Project

(2009) et al.   GENOME RESEARCH

Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis

(2009) D A Hill et al.   Mucosal Immunology

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

The Macaque Gut Microbiome in Health, Lentiviral Infection, and Chronic Enterocolitis

(2008) Philip McKenna et al.   PLoS Pathogens