Characterization of Peroxidase and Laccase Gene Families and In Silico Identification of Potential Genes Involved in Upstream Steps of Lignan Formation in Sesame

Genome-Wide Analysis of the Peroxidase Gene Family and Verification of Lignin Synthesis-Related Genes in Watermelon

(2022) Tiantian Yang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide identification and characterization of laccase family members in eggplant (Solanum melongena L.)

(2022) Faxiang Wan et al.   PeerJ

Genome-wide identification and functional analysis of the peach (P. persica) laccase gene family reveal members potentially involved in endocarp lignification

(2022) Keli Qui et al.   TREES-STRUCTURE AND FUNCTION

The impact of tandem duplication on gene evolution in Solanaceae species

(2022) Yi-le HUANG et al.   Journal of Integrative Agriculture

Genome-Wide Identification of Switchgrass Laccases Involved in Lignin Biosynthesis and Heavy-Metal Responses

(2022) Rui Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Lignans of Sesame (Sesamum indicum L.): A Comprehensive Review

(2021) Mebeaselassie Andargie et al.   MOLECULES

Genome-wide identification and analysis of class III peroxidases in Betula pendula

(2021) Kewei Cai et al.   BMC GENOMICS

Genome-Wide Characterization of Glutathione Peroxidase (GPX) Gene Family in Rapeseed (Brassica napus L.) Revealed Their Role in Multiple Abiotic Stress Response and Hormone Signaling

(2021) Wei Li et al.   Antioxidants

Genome-wide characterization and functional analysis of class III peroxidase gene family in soybean reveal regulatory roles of GsPOD40 in drought tolerance

(2021) Muqadas Aleem et al.   GENOMICS

Characterisation of the class III peroxidase gene family in carrot taproots and its role in anthocyanin and lignin accumulation

(2021) Geng Meng et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome-wide identification of the class III POD gene family and their expression profiling in grapevine (Vitis vinifera L)

(2020) Huilin Xiao et al.   BMC GENOMICS

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Class III peroxidase: an indispensable enzyme for biotic/abiotic stress tolerance and a potent candidate for crop improvement

(2020) Maria Kidwai et al.   PLANT CELL REPORTS

(+)‐Sesamin‐oxidising CYP92B14 shapes specialised lignan metabolism in sesame

(2020) Erisa Harada et al.   PLANT JOURNAL

Dwarfism of high‐monolignol Arabidopsis plants is rescued by ectopic LACCASE overexpression

(2020) Mendel L. Perkins et al.   Plant Direct

Transcriptome Dynamics during Black and White Sesame (Sesamum indicum L.) Seed Development and Identification of Candidate Genes Associated with Black Pigmentation

(2020) Linhai Wang et al.   Genes

Genome-Wide Identification and Expression Analysis of the Class III Peroxidase Gene Family in Potato (Solanum tuberosum L.)

(2020) Xuanshong Yang et al.   Frontiers in Genetics

Naturally Lignan-Rich Foods: A Dietary Tool for Health Promotion?

(2019) Carmen Rodríguez-García et al.   MOLECULES

Gene expression profiles that shape high and low oil content sesames

(2019) Linhai Wang et al.   BMC GENETICS

The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression

(2019) Chunlai Wu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sesame Lignans Suppress Age-Related Cognitive Decline in Senescence-Accelerated Mice

(2019) Satomi Shimoyoshi et al.   Nutrients

Genome-Wide Identification and Analysis of Class III Peroxidases in Allotetraploid Cotton (Gossypium hirsutum L.) and their Responses to PK Deficiency

(2019) Duan et al.   Genes

Drought stress influenced sesamin and sesamolin content and polyphenolic components in sesame (Sesamum indicum L.) populations with contrasting seed coat colors

(2019) Sepideh Ghotbzadeh Kermani et al.   FOOD CHEMISTRY

PlantRegMap: charting functional regulatory maps in plants

(2019) Feng Tian et al.   NUCLEIC ACIDS RESEARCH

Anti-Inflammatory and Anticancer Properties of Bioactive Compounds from Sesamum indicum L.—A Review

(2019) Ming-Shun Wu et al.   MOLECULES

Glycoside‐specific glycosyltransferases catalyze regio‐selective sequential glucosylations for a sesame lignan, sesaminol triglucoside

(2019) Eiichiro Ono et al.   PLANT JOURNAL

Insight into the evolution and functional characteristics of the pan‐genome assembly from sesame landraces and modern cultivars

(2018) Jingyin Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Laccase GhLac1 Modulates Broad-Spectrum Biotic Stress Tolerance via Manipulating Phenylpropanoid Pathway and Jasmonic Acid Synthesis

(2017) Qin Hu et al.   PLANT PHYSIOLOGY

PacMYBA, a sweet cherry R2R3-MYB transcription factor, is a positive regulator of salt stress tolerance and pathogen resistance

(2017) Xinjie Shen et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Oxidative rearrangement of (+)-sesamin by CYP92B14 co-generates twin dietary lignans in sesame

(2017) Jun Murata et al.   Nature Communications

Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress

(2016) Komivi Dossa et al.   BMC PLANT BIOLOGY

Effects of Sesaminol Feeding on Brain Aβ Accumulation in a Senescence-Accelerated Mouse-Prone 8

(2016) Shigeru Katayama et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Structural, Evolutionary, and Functional Analysis of the Class III Peroxidase Gene Family in Chinese Pear (Pyrus bretschneideri)

(2016) Yunpeng Cao et al.   Frontiers in Plant Science

Systematic analysis of maize class III peroxidase gene family reveals a conserved subfamily involved in abiotic stress response

(2015) Yu Wang et al.   GENE

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The MEME Suite

(2015) Timothy L. Bailey et al.   NUCLEIC ACIDS RESEARCH

An Intracellular Laccase is Responsible for the Epicatechin Mediated Anthocyanin Degradation in Litchi Fruit Pericarp

(2015) Fang Fang et al.   PLANT PHYSIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Gut Microbiota Metabolites of Dietary Lignans and Risk of Type 2 Diabetes: A Prospective Investigation in Two Cohorts of U.S. Women

(2014) Qi Sun et al.   DIABETES CARE

Effects of consumption of whole grain foods rich in lignans in healthy postmenopausal women with moderate serum cholesterol: a pilot study

(2014) A. Durazzo et al.   INTERNATIONAL JOURNAL OF FOOD SCIENCES AND NUTRITION

Trimeric Structure of (+)-Pinoresinol-forming Dirigent Protein at 1.95 Å Resolution with Three Isolated Active Sites

(2014) Kye-Won Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Subcellular Relocalization and Positive Selection Play Key Roles in the Retention of Duplicate Genes of Populus Class III Peroxidase Family

(2014) L.-L. Ren et al.   PLANT CELL

Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis

(2014) Linhai Wang et al.   GENOME BIOLOGY

From Zinnia to Arabidopsis: approaching the involvement of peroxidases in lignification

(2013) Esther Novo-Uzal et al.   JOURNAL OF EXPERIMENTAL BOTANY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Overexpression of microRNA OsmiR397 improves rice yield by increasing grain size and promoting panicle branching

(2013) Yu-Chan Zhang et al.   NATURE BIOTECHNOLOGY

Metabolic Interaction between Anthocyanin and Lignin Biosynthesis Is Associated with Peroxidase FaPRX27 in Strawberry Fruit

(2013) L. Ring et al.   PLANT PHYSIOLOGY

Dietary flavonoid and lignan intake and gastric adenocarcinoma risk in the European Prospective Investigation into Cancer and Nutrition (EPIC) study

(2012) Raul Zamora-Ros et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Urinary Enterolignan Concentrations Are Positively Associated with Serum HDL Cholesterol and Negatively Associated with Serum Triglycerides in U.S. Adults

(2012) José L. Peñalvo et al.   JOURNAL OF NUTRITION

HPLC Analysis of Seed Sesamin and Sesamolin Variation in a Sesame Germplasm Collection in China

(2012) Linhai Wang et al.   JOURNAL OF THE AMERICAN OIL CHEMISTS SOCIETY

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

The Apoplastic Oxidative Burst Peroxidase in Arabidopsis Is a Major Component of Pattern-Triggered Immunity

(2012) A. Daudi et al.   PLANT CELL

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Dietary lignans: physiology and potential for cardiovascular disease risk reduction

(2010) Julia Peterson et al.   NUTRITION REVIEWS

The laccase multigene family in Arabidopsis thaliana: towards addressing the mystery of their gene function(s)

(2010) Phanikanth V. Turlapati et al.   PLANTA

An Enantiocomplementary Dirigent Protein for the Enantioselective Laccase-Catalyzed Oxidative Coupling of Phenols

(2009) Benjamin Pickel et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Sequential glucosylation of a furofuran lignan, (+)-sesaminol, by Sesamum indicum UGT71A9 and UGT94D1 glucosyltransferases

(2008) Akio Noguchi et al.   PLANT JOURNAL