Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis

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Small RNAs couple embryonic developmental programs to gut microbes

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Cellular plasticity at the nexus of development and disease

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Single‐cell dynamics of chromatin activity during cell lineage differentiation in Caenorhabditis elegans embryos

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Piecemeal regulation of convergent neuronal lineages by bHLH transcription factors in Caenorhabditis elegans

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A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis

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­­­cnd-1/NeuroD1 Functions with the Homeobox Gene ceh-5/Vax2 and Hox Gene ­ceh-13/Labial to Specify Aspects of RME and DD Neuron Fate in Caenorhabditis elegans

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Regulation of Gliogenesis by lin-32/Atoh1 in Caenorhabditis elegans

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Systems Properties and Spatiotemporal Regulation of Cell Position Variability during Embryogenesis

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A high-content imaging approach to profile C. elegans embryonic development

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PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components

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Cellular Plasticity in Cancer

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A multicellular rosette-mediated collective dendrite extension

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Nomenclature for cellular plasticity: are the terms as plastic as the cells themselves?

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A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution

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AceTree: a major update and case study in the long term maintenance of open-source scientific software

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Establishment of Signaling Interactions with Cellular Resolution for Every Cell Cycle of Embryogenesis

(2018) Long Chen et al.   GENETICS

Establishment of Signaling Interactions with Cellular Resolution for Every Cell Cycle of Embryogenesis

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Tissue stiffening coordinates morphogenesis by triggering collective cell migration in vivo

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Twenty million years of evolution: The embryogenesis of four Caenorhabditis species are indistinguishable despite extensive genome divergence

(2018) Nadin Memar et al.   DEVELOPMENTAL BIOLOGY

Adhesion forces and cortical tension couple cell proliferation and differentiation to drive epidermal stratification

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Expression Atlas: gene and protein expression across multiple studies and organisms

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Actin-Based Adhesion Modules Mediate Cell Interactions with the Extracellular Matrix and Neighboring Cells

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Genetic compensation: A phenomenon in search of mechanisms

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A Transcriptional Lineage of the Early C. elegans Embryo

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The time-resolved transcriptome ofC. elegans

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Adult cell plasticity in vivo: de-differentiation and transdifferentiation are back in style

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Compensatory Cell Movements Confer Robustness to Mechanical Deformation during Embryonic Development

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E3 ubiquitin ligases promote progression of differentiation during C. elegans embryogenesis

(2015) Zhuo Du et al.   DEVELOPMENTAL BIOLOGY

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo

(2015) Zhuo Du et al.   DEVELOPMENTAL CELL

A Conserved Phosphorylation Switch Controls the Interaction between Cadherin and β-Catenin In Vitro and In Vivo

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Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry

(2015) V. W. S. Ho et al.   Molecular Systems Biology

Genetic compensation induced by deleterious mutations but not gene knockdowns

(2015) Andrea Rossi et al.   NATURE

Pervasive robustness in biological systems

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Digital development: a database of cell lineage differentiation inC. eleganswith lineage phenotypes, cell-specific gene functions and a multiscale model

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The BioMart community portal: an innovative alternative to large, centralized data repositories

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A semi-local neighborhood-based framework for probabilistic cell lineage tracing

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De Novo Inference of Systems-Level Mechanistic Models of Development from Live-Imaging-Based Phenotype Analysis

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PAR-4/LKB1 regulates DNA replication during asynchronous division of the earlyC. elegansembryo

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Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer

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Diabetes recovery by age-dependent conversion of pancreatic δ-cells into insulin producers

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Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis

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Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification

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Coordinating cell polarity and cell cycle progression: what can we learn from flies and worms?

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Actomyosin-based Self-organization of cell internalization during C. elegans gastrulation

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The Majority of Animal Genes Are Required for Wild-Type Fitness

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Step-Wise Methylation of Histone H3K9 Positions Heterochromatin at the Nuclear Periphery

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Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos

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A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress

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RNA-Seq analysis in MeV

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The Cellular Basis for Animal Regeneration

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Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression

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Fate Specification and Tissue-specific Cell Cycle Control of the Caenorhabditis elegans Intestine

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Variability in gene expression underlies incomplete penetrance

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MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

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Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

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KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

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Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition

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Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps

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Why Is the Correlation between Gene Importance and Gene Evolutionary Rate So Weak?

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CDC-25.1 stability is regulated by distinct domains to restrict cell division during embryogenesis in C. elegans

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Control of cell cycle timing during C. elegans embryogenesis

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Automated analysis of embryonic gene expression with cellular resolution in C. elegans

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