Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

(2010) Ashish Agarwal et al.   BMC GENOMICS

Functional roles for noise in genetic circuits

(2010) Avigdor Eldar et al.   NATURE

High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences

(2010) Desiree Tillo et al.   PLoS One

The Landscape of C. elegans 3'UTRs

(2010) M. Mangone et al.   SCIENCE

The Role of Nucleosome Positioning in the Evolution of Gene Regulation

(2010) Alexander M. Tsankov et al.   PLOS BIOLOGY

The Histone H3K36 Methyltransferase MES-4 Acts Epigenetically to Transmit the Memory of Germline Gene Expression to Progeny

(2010) Andreas Rechtsteiner et al.   PLoS Genetics

A Multiparameter Network Reveals Extensive Divergence between C. elegans bHLH Transcription Factors

(2009) Christian A. Grove et al.   CELL

Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans

(2009) Xiao Liu et al.   CELL

Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning

(2009) Sam Guoping Gu et al.   CHROMOSOMA

The C. elegans Dosage Compensation Complex Propagates Dynamically and Independently of X Chromosome Sequence

(2009) Sevinç Ercan et al.   CURRENT BIOLOGY

Poly(dA:dT) tracts: major determinants of nucleosome organization

(2009) Eran Segal et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome

(2009) J. Jans et al.   GENES & DEVELOPMENT

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans

(2009) L. W. Hillier et al.   GENOME RESEARCH

Unlocking the secrets of the genome

(2009) Susan E. Celniker et al.   NATURE

Identification of chromosome sequence motifs that mediate meiotic pairing and synapsis in C. elegans

(2009) Carolyn M. Phillips et al.   NATURE CELL BIOLOGY

Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression

(2009) Marlon Stoeckius et al.   NATURE METHODS

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans

(2009) Siew Loon Ooi et al.   NUCLEIC ACIDS RESEARCH

WormBase: a comprehensive resource for nematode research

(2009) Todd W. Harris et al.   NUCLEIC ACIDS RESEARCH

Recombinational Landscape and Population Genomics of Caenorhabditis elegans

(2009) Matthew V. Rockman et al.   PLoS Genetics

Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development

(2009) Masaomi Kato et al.   GENOME BIOLOGY

Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions

(2009) Stewart MacArthur et al.   GENOME BIOLOGY

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity

(2008) N. J. Martinez et al.   GENES & DEVELOPMENT

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

(2008) A. Valouev et al.   GENOME RESEARCH

Genomics: Protein fossils live on as RNA

(2008) Rajkumar Sasidharan et al.   NATURE

The DNA-encoded nucleosome organization of a eukaryotic genome

(2008) Noam Kaplan et al.   NATURE

Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network

(2008) Nicolas Simonis et al.   NATURE METHODS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals

(2008) Yair Field et al.   PLoS Computational Biology