Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Standardization of Synthetic Biology Tools and Assembly Methods for Saccharomyces cerevisiae and Emerging Yeast Species
Authors
Keywords
-
Journal
ACS Synthetic Biology
Volume -, Issue -, Pages -
Publisher
American Chemical Society (ACS)
Online
2022-08-09
DOI
10.1021/acssynbio.1c00442
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Automation and Expansion of EMMA Assembly for Fast-Tracking Mammalian System Engineering
- (2022) Joshua S. James et al. ACS Synthetic Biology
- Introducing an Artificial Deazaflavin Cofactor in Escherichia coli and Saccharomyces cerevisiae
- (2022) Misun Lee et al. ACS Synthetic Biology
- Construction of engineered RuBisCO Kluyveromyces marxianus for a dual microbial bioethanol production system
- (2021) Dung Minh Ha-Tran et al. PLoS One
- Production of d-lactic acid containing polyhydroxyalkanoate polymers in yeast Saccharomyces cerevisiae
- (2021) Anna Ylinen et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- A modular two yeast species secretion system for the production and preparative application of unspecific peroxygenases
- (2021) Pascal Püllmann et al. Communications Biology
- Development of synthetic biology tools to engineer Pichia pastoris as a chassis for the production of natural products
- (2021) Jucan Gao et al. Synthetic and Systems Biotechnology
- Expansion of the Yeast Modular Cloning Toolkit for CRISPR-Based Applications, Genomic Integrations and Combinatorial Libraries
- (2021) Maximilian Otto et al. ACS Synthetic Biology
- Engineering Yeast for De Novo Synthesis of the Insect Repellent Nepetalactone
- (2021) Meghan E. Davies et al. ACS Synthetic Biology
- The long journey towards standards for engineering biosystems
- (2020) Jacob Beal et al. EMBO REPORTS
- DNA Chisel, a versatile sequence optimizer
- (2020) Valentin Zulkower et al. BIOINFORMATICS
- Bioproduction of succinic acid from xylose by engineered Yarrowia lipolytica without pH control
- (2020) Ashish A. Prabhu et al. Biotechnology for Biofuels
- Kluyveromyces marxianus: An emerging yeast cell factory for applications in food and biotechnology
- (2020) Ahasanul Karim et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Engineering isoprenoid quinone production in yeast
- (2020) Divjot Kaur et al. ACS Synthetic Biology
- Metabolic engineering of Yarrowia lipolytica for thermoresistance and enhanced erythritol productivity
- (2020) Nan Wang et al. Biotechnology for Biofuels
- Enabling one-pot Golden Gate assemblies of unprecedented complexity using data-optimized assembly design
- (2020) John M. Pryor et al. PLoS One
- Combinatorial metabolic pathway assembly approaches and toolkits for modular assembly
- (2020) Rosanna Young et al. METABOLIC ENGINEERING
- Release of glucose repression on xylose utilization in Kluyveromyces marxianus to enhance glucose-xylose co-utilization and xylitol production from corncob hydrolysate
- (2019) Yan Hua et al. Microbial Cell Factories
- Standardizing Automated DNA Assembly: Best Practices, Metrics, and Protocols Using Robots
- (2019) David I. Walsh et al. SLAS Technology
- Engineering a Model Cell for Rational Tuning of GPCR Signaling
- (2019) William M. Shaw et al. CELL
- A modular Golden Gate toolkit for Yarrowia lipolytica synthetic biology
- (2019) Macarena Larroude et al. Microbial Biotechnology
- Biological Parts for Kluyveromyces marxianus Synthetic Biology
- (2019) Arun S. Rajkumar et al. Frontiers in Bioengineering and Biotechnology
- A yeast optogenetic toolkit (yOTK) for gene expression control in Saccharomyces cerevisiae
- (2019) Jidapas (My) An‐adirekkun et al. BIOTECHNOLOGY AND BIOENGINEERING
- Engineering the oleaginous yeast Yarrowia lipolytica for production of α-farnesene
- (2019) Yinghang Liu et al. Biotechnology for Biofuels
- Engineering Yarrowia lipolytica to enhance lipid production from lignocellulosic materials
- (2018) Xochitl Niehus et al. Biotechnology for Biofuels
- EasyCloneYALI: CRISPR/Cas9-Based Synthetic Toolbox for Engineering of the Yeast Yarrowia lipolytica
- (2018) Carina Holkenbrink et al. Biotechnology Journal
- Escherichia coli as a host for metabolic engineering
- (2018) Sammy Pontrelli et al. METABOLIC ENGINEERING
- Metabolic engineering of Pichia pastoris
- (2018) David A. Peña et al. METABOLIC ENGINEERING
- Construction of hybrid regulated mother-specific yeast promoters for inducible differential gene expression
- (2018) Georgios Pothoulakis et al. PLoS One
- Improving the efficiency of homologous recombination by chemical and biological approaches in Yarrowia lipolytica
- (2018) In-Seung Jang et al. PLoS One
- Building better yeast
- (2018) Nature Communications
- EasyCloneYALI: CRISPR/Cas9-Based Synthetic Toolbox for Engineering of the Yeast Yarrowia lipolytica
- (2018) Carina Holkenbrink et al. Biotechnology Journal
- Advancing metabolic engineering of Yarrowia lipolytica using the CRISPR/Cas system
- (2018) Tian-Qiong Shi et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Metabolic engineering in the host Yarrowia lipolytica
- (2018) Ahmad M. Abdel-Mawgoud et al. METABOLIC ENGINEERING
- Rapid Prototyping Platform for Saccharomyces cerevisiae Using Computer-Aided Genetic Design Enabled by Parallel Software and Workcell Platform Development
- (2018) P. D. Rajakumar et al. SLAS Technology
- Engineering biological systems using automated biofoundries
- (2017) Ran Chao et al. METABOLIC ENGINEERING
- Lipid production in Yarrowia lipolytica is maximized by engineering cytosolic redox metabolism
- (2017) Kangjian Qiao et al. NATURE BIOTECHNOLOGY
- A Modular Toolkit for Generating Pichia pastoris Secretion Libraries
- (2017) Ulrike Obst et al. ACS Synthetic Biology
- Production of Medium Chain Fatty Acids by Yarrowia lipolytica: Combining Molecular Design and TALEN to Engineer the Fatty Acid Synthase
- (2017) Coraline Rigouin et al. ACS Synthetic Biology
- Physiological growth and galactose utilization by dairy yeast Kluyveromyces marxianus in mixed sugars and whey during fermentation
- (2017) Arun Beniwal et al. 3 Biotech
- Physiological growth and galactose utilization by dairy yeast Kluyveromyces marxianus in mixed sugars and whey during fermentation
- (2017) Arun Beniwal et al. 3 Biotech
- EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9
- (2016) Mathew M Jessop-Fabre et al. Biotechnology Journal
- High molecular weight DNA assembly in vivo for synthetic biology applications
- (2016) Mario Juhas et al. CRITICAL REVIEWS IN BIOTECHNOLOGY
- A Cas9-based toolkit to program gene expression inSaccharomyces cerevisiae
- (2016) Amanda Reider Apel et al. NUCLEIC ACIDS RESEARCH
- Standardization efforts: The relationship between knowledge dimensions, search processes and innovation outcomes
- (2016) Zongjie Xie et al. TECHNOVATION
- The Next Generation of Synthetic Biology Chassis: Moving Synthetic Biology from the Laboratory to the Field
- (2016) Bryn L. Adams ACS Synthetic Biology
- EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9
- (2016) Mathew M Jessop-Fabre et al. Biotechnology Journal
- Yeast metabolic chassis designs for diverse biotechnological products
- (2016) Paula Jouhten et al. Scientific Reports
- Dual tagging as an approach to isolate endogenous chromatin remodeling complexes from Saccharomyces cerevisiae
- (2015) Tzong-Yuan Lin et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae
- (2015) Robert Mans et al. FEMS YEAST RESEARCH
- Editorial: Yeast synthetic biology: new tools to unlock cellular function
- (2015) FEMS YEAST RESEARCH
- EasyClone 2.0: expanded toolkit of integrative vectors for stable gene expression in industrial Saccharomyces cerevisiae strains
- (2015) Vratislav Stovicek et al. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY
- Establishment of a yeast platform strain for production of p- coumaric acid through metabolic engineering of aromatic amino acid biosynthesis
- (2015) Angelica Rodriguez et al. METABOLIC ENGINEERING
- Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae
- (2015) Tadas Jakočiūnas et al. METABOLIC ENGINEERING
- YeastFab: the design and construction of standard biological parts for metabolic engineering inSaccharomyces cerevisiae
- (2015) Yakun Guo et al. NUCLEIC ACIDS RESEARCH
- A Highly Characterized Yeast Toolkit for Modular, Multipart Assembly
- (2015) Michael E. Lee et al. ACS Synthetic Biology
- CIDAR MoClo: Improved MoClo Assembly Standard and New E. coli Part Library Enable Rapid Combinatorial Design for Synthetic and Traditional Biology
- (2015) Sonya V. Iverson et al. ACS Synthetic Biology
- Strep-tag II and Twin-Strep Based Cassettes for Protein Tagging by Homologous Recombination and Characterization of Endogenous Macromolecular Assemblies in Saccharomyces cerevisiae
- (2014) Jay Rai et al. MOLECULAR BIOTECHNOLOGY
- Engineering Acetyl Coenzyme A Supply: Functional Expression of a Bacterial Pyruvate Dehydrogenase Complex in the Cytosol of Saccharomyces cerevisiae
- (2014) B. U. Kozak et al. mBio
- Homology-Integrated CRISPR–Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae
- (2014) Zehua Bao et al. ACS Synthetic Biology
- Selection of chromosomal DNA libraries using a multiplex CRISPR system
- (2014) Owen W Ryan et al. eLife
- Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica
- (2013) A. Beopoulos et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- New opportunities by synthetic biology for biopharmaceutical production in Pichia pastoris
- (2013) Thomas Vogl et al. CURRENT OPINION IN BIOTECHNOLOGY
- EasyClone: method for iterative chromosomal integration of multiple genes inSaccharomyces cerevisiae
- (2013) Niels B. Jensen et al. FEMS YEAST RESEARCH
- Simple and efficient recycling of fungal selectable marker genes with the Cre-loxP recombination system via anastomosis
- (2013) Dong-Xiu Zhang et al. FUNGAL GENETICS AND BIOLOGY
- Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
- (2013) James E. DiCarlo et al. NUCLEIC ACIDS RESEARCH
- The Yeast Shu Complex Utilizes Homologous Recombination Machinery for Error-free Lesion Bypass via Physical Interaction with a Rad51 Paralogue
- (2013) Xin Xu et al. PLoS One
- The homologous recombination machinery modulates the formation of RNA–DNA hybrids and associated chromosome instability
- (2013) Lamia Wahba et al. eLife
- Characterization of plasmid burden and copy number inSaccharomyces cerevisiaefor optimization of metabolic engineering applications
- (2012) Ashty S. Karim et al. FEMS YEAST RESEARCH
- De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae
- (2012) Frank Koopman et al. Microbial Cell Factories
- Cellular Noise Regulons Underlie Fluctuations in Saccharomyces cerevisiae
- (2012) Jacob Stewart-Ornstein et al. MOLECULAR CELL
- Improving FRET dynamic range with bright green and red fluorescent proteins
- (2012) Amy J Lam et al. NATURE METHODS
- Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools
- (2012) T. S. Ham et al. NUCLEIC ACIDS RESEARCH
- Cassette series designed for live-cell imaging of proteins and high-resolution techniques in yeast
- (2012) Carissa L. Young et al. YEAST
- Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93%
- (2012) Joachim Goedhart et al. Nature Communications
- The Saccharomyces cerevisiae SCRaMbLE system and genome minimization
- (2012) Jessica Dymond et al. Bioengineered
- Yeast 2.0
- (2011) Tal Nawy NATURE METHODS
- A Modular Cloning System for Standardized Assembly of Multigene Constructs
- (2011) Ernst Weber et al. PLoS One
- GoldenBraid: An Iterative Cloning System for Standardized Assembly of Reusable Genetic Modules
- (2011) Alejandro Sarrion-Perdigones et al. PLoS One
- Building outside of the box: iGEM and the BioBricks Foundation
- (2009) Christina D Smolke NATURE BIOTECHNOLOGY
- Characterization of chromosomal integration sites for heterologous gene expression inSaccharomyces cerevisiae
- (2009) Dongmei Bai Flagfeldt et al. YEAST
- A One Pot, One Step, Precision Cloning Method with High Throughput Capability
- (2008) Carola Engler et al. PLoS One
- One-step assembly in yeast of 25 overlapping DNA fragments to form a complete synthetic Mycoplasma genitalium genome
- (2008) D. G. Gibson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome
- (2008) D. G. Gibson et al. SCIENCE
- Engineering BioBrick vectors from BioBrick parts
- (2008) Reshma P Shetty et al. Journal of Biological Engineering
- A framework for ICT standards creation: The case of ITU-T standard H.350
- (2007) Jon Saltzman et al. INFORMATION SYSTEMS
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started