Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod
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Title
Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod
Authors
Keywords
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Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-07-12
DOI
10.1038/s41467-022-31622-8
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Note: Only part of the references are listed.- Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod
- (2022) Reid S. Brennan et al. Nature Communications
- Molecular Parallelism Underlies Convergent Highland Adaptation of Maize Landraces
- (2021) Li Wang et al. MOLECULAR BIOLOGY AND EVOLUTION
- Modifying the Chi-square and the CMH test for population genetic inference: Adapting to overdispersion
- (2020) Kerstin Spitzer et al. Annals of Applied Statistics
- Distinct patterns of selective sweep and polygenic adaptation in evolve and re-sequence studies
- (2020) Neda Barghi et al. Genome Biology and Evolution
- Polygenic adaptation: a unifying framework to understand positive selection
- (2020) Neda Barghi et al. NATURE REVIEWS GENETICS
- Evolutionary origins of genomic adaptations in an invasive copepod
- (2020) David Ben Stern et al. Nature Ecology & Evolution
- Rapid evolution of genome‐wide gene expression and plasticity during saline to freshwater invasions by the copepod Eurytemora affinis species complex
- (2020) Marijan Posavi et al. MOLECULAR ECOLOGY
- Parallel gene expression evolution in natural and laboratory evolved populations
- (2020) Sheng‐Kai Hsu et al. MOLECULAR ECOLOGY
- Detecting selected haplotype blocks in evolve and resequence experiments
- (2020) Kathrin A. Otte et al. Molecular Ecology Resources
- Liftoff: accurate mapping of gene annotations
- (2020) Alaina Shumate et al. BIOINFORMATICS
- Polygenic adaptation: From sweeps to subtle frequency shifts
- (2019) Ilse Höllinger et al. PLoS Genetics
- Genetic redundancy fuels polygenic adaptation in Drosophila
- (2019) Neda Barghi et al. PLOS BIOLOGY
- Natural selection on the Arabidopsis thaliana genome in present and future climates
- (2019) Moises Exposito-Alonso et al. NATURE
- Fast and accurate long-read assembly with wtdbg2
- (2019) Jue Ruan et al. NATURE METHODS
- Standing genetic variation fuels rapid adaptation to ocean acidification
- (2019) M. C. Bitter et al. Nature Communications
- Population Genomics of Herbicide Resistance: Adaptation via Evolutionary Rescue
- (2018) Julia M. Kreiner et al. Annual Review of Plant Biology
- (Non)Parallel Evolution
- (2018) Daniel I. Bolnick et al. Annual Review of Ecology Evolution and Systematics
- Measuring Genetic Differentiation from Pool-seq Data
- (2018) Valentin Hivert et al. GENETICS
- MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
- (2018) Christos Vlachos et al. PLoS Computational Biology
- Pervasive Linked Selection and Intermediate-Frequency Alleles Are Implicated in an Evolve-and-Resequencing Experiment of Drosophila simulans
- (2018) John K. Kelly et al. GENETICS
- Light capture and pigment diversity in marine and freshwater cryptophytes
- (2018) Brady R. Cunningham et al. JOURNAL OF PHYCOLOGY
- SLiM 3: Forward Genetic Simulations Beyond the Wright–Fisher Model
- (2018) Benjamin C Haller et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and accurate de novo genome assembly from long uncorrected reads
- (2017) Robert Vaser et al. GENOME RESEARCH
- Quantifying Selection with Pool-Seq Time Series Data
- (2017) Thomas Taus et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda
- (2017) Seong-il Eyun et al. MOLECULAR BIOLOGY AND EVOLUTION
- Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution
- (2016) A. Jonas et al. GENETICS
- Uncovering the genetic signature of quantitative trait evolution with replicated time series data
- (2016) S U Franssen et al. HEREDITY
- On the maintenance of genetic variation and adaptation to environmental change: considerations from population genomics in fishes
- (2016) L. Bernatchez JOURNAL OF FISH BIOLOGY
- Reconstruction of Haplotype-Blocks Selected during Experimental Evolution
- (2016) Susanne U. Franssen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genomics of local adaptation with gene flow
- (2016) Anna Tigano et al. MOLECULAR ECOLOGY
- Causes of molecular convergence and parallelism in protein evolution
- (2016) Jay F. Storz NATURE REVIEWS GENETICS
- The effect of gene interactions on the long-term response to selection
- (2016) Tiago Paixão et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Convergent local adaptation to climate in distantly related conifers
- (2016) S. Yeaman et al. SCIENCE
- Local Adaptation by Alleles of Small Effect
- (2015) Sam Yeaman AMERICAN NATURALIST
- Climate Comparisons and Change Projections for the Northwest Atlantic from Six CMIP5 Models
- (2015) John W. Loder et al. ATMOSPHERE-OCEAN
- Scenario Changes of Atlantic Water in the Arctic Ocean
- (2015) Zhenxia Long et al. JOURNAL OF CLIMATE
- Fitting Linear Mixed-Effects Models Usinglme4
- (2015) Douglas Bates et al. Journal of Statistical Software
- Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication
- (2015) Ryan J. Haasl et al. MOLECULAR ECOLOGY
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation
- (2014) C Schlötterer et al. HEREDITY
- WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data
- (2014) Matthieu Foll et al. Molecular Ecology Resources
- Habitat Heterogeneity Determines Climate Impact on Zooplankton Community Structure and Dynamics
- (2014) Saskia A. Otto et al. PLoS One
- A Population Genetic Signal of Polygenic Adaptation
- (2014) Jeremy J. Berg et al. PLoS Genetics
- Adaptive approximate Bayesian computation for complex models
- (2013) Maxime Lenormand et al. COMPUTATIONAL STATISTICS
- A practical guide to measuring local adaptation
- (2013) François Blanquart et al. ECOLOGY LETTERS
- WHY EPISTASIS IS IMPORTANT FOR SELECTION AND ADAPTATION
- (2013) Thomas F. Hansen EVOLUTION
- The Genomic Signal of Partial Sweeps in Mimulus guttatus
- (2013) John K. Kelly et al. Genome Biology and Evolution
- A Guide for the Design of Evolve and Resequencing Studies
- (2013) Robert Kofler et al. MOLECULAR BIOLOGY AND EVOLUTION
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- The genetic causes of convergent evolution
- (2013) David L. Stern NATURE REVIEWS GENETICS
- EasyABC: performing efficient approximate Bayesian computation sampling schemes using R
- (2013) Franck Jabot et al. Methods in Ecology and Evolution
- Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies
- (2012) R. Kofler et al. BIOINFORMATICS
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- The genomic basis of adaptive evolution in threespine sticklebacks
- (2012) Felicity C. Jones et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data
- (2012) Alison F. Feder et al. PLoS One
- Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring
- (2012) S. Lamichhaney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The probability of genetic parallelism and convergence in natural populations
- (2012) G. L. Conte et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Structure and function of ionocytes in the freshwater fish gill
- (2012) Agnieszka K. Dymowska et al. RESPIRATORY PHYSIOLOGY & NEUROBIOLOGY
- The Molecular Diversity of Adaptive Convergence
- (2012) O. Tenaillon et al. SCIENCE
- Ocean Salinities Reveal Strong Global Water Cycle Intensification During 1950 to 2000
- (2012) P. J. Durack et al. SCIENCE
- Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
- (2012) Joseph K. Pickrell et al. PLoS Genetics
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- A gene-based SNP resource and linkage map for the copepod Tigriopus californicus
- (2011) Brad R Foley et al. BMC GENOMICS
- PUMPING IONS: RAPID PARALLEL EVOLUTION OF IONIC REGULATION FOLLOWING HABITAT INVASIONS
- (2011) Carol Eunmi Lee et al. EVOLUTION
- ESTABLISHMENT AND MAINTENANCE OF ADAPTIVE GENETIC DIVERGENCE UNDER MIGRATION, SELECTION, AND DRIFT
- (2011) Sam Yeaman et al. EVOLUTION
- Genetic heterogeneity among Eurytemora affinis populations in Western Europe
- (2011) Gesche Winkler et al. MARINE BIOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Adaptation in the age of ecological genomics: insights from parallelism and convergence
- (2011) Kathryn R. Elmer et al. TRENDS IN ECOLOGY & EVOLUTION
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Remarkably ancient balanced polymorphisms in a multi-locus gene network
- (2010) Chris Todd Hittinger et al. NATURE
- Genome-wide analysis of a long-term evolution experiment with Drosophila
- (2010) Molly K. Burke et al. NATURE
- Adaptation – not by sweeps alone
- (2010) Jonathan K. Pritchard et al. NATURE REVIEWS GENETICS
- On epistasis: why it is unimportant in polygenic directional selection
- (2010) J. F. Crow PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Status of Biodiversity in the Baltic Sea
- (2010) Henn Ojaveer et al. PLoS One
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Maintaining evolvability
- (2009) James F. Crow JOURNAL OF GENETICS
- Reconstructing Indian population history
- (2009) David Reich et al. NATURE
- Heterogeneity within the native range: population genetic analyses of sympatric invasive and noninvasive clades of the freshwater invading copepodEurytemora affinis
- (2007) GESCHE WINKLER et al. MOLECULAR ECOLOGY
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