Genetic redundancy fuels polygenic adaptation in Drosophila

Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares

(2018) Matthew R. Jones et al.   SCIENCE

Quantifying Selection with Pool-Seq Time Series Data

(2017) Thomas Taus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Linkage disequilibrium–dependent architecture of human complex traits shows action of negative selection

(2017) Steven Gazal et al.   NATURE GENETICS

High rate of translocation-based gene birth on theDrosophilaY chromosome

(2017) Ray Tobler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Drosophila simulans : A Species with Improved Resolution in Evolve and Resequence Studies

(2017) Neda Barghi et al.   G3-Genes Genomes Genetics

A Variable Genetic Architecture of Melanic Evolution in Drosophila melanogaster

(2016) H. Bastide et al.   GENETICS

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution

(2016) A. Jonas et al.   GENETICS

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

Uncovering the genetic signature of quantitative trait evolution with replicated time series data

(2016) S U Franssen et al.   HEREDITY

PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq

(2016) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstruction of Haplotype-Blocks Selected during Experimental Evolution

(2016) Susanne U. Franssen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The industrial melanism mutation in British peppered moths is a transposable element

(2016) Arjen E. van’t Hof et al.   NATURE

Convergent local adaptation to climate in distantly related conifers

(2016) S. Yeaman et al.   SCIENCE

Predictable convergence in hemoglobin function has unpredictable molecular underpinnings

(2016) Chandrasekhar Natarajan et al.   SCIENCE

Ancestral population reconstitution from isofemale lines as a tool for experimental evolution

(2016) Pierre Nouhaud et al.   Ecology and Evolution

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Parallel trait adaptation across opposing thermal environments in experimentalDrosophila melanogasterpopulations

(2015) Ray Tobler et al.   EVOLUTION

Energy Homeostasis Control inDrosophilaAdipokinetic Hormone Mutants

(2015) Martina Gáliková et al.   GENETICS

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The recent invasion of naturalDrosophila simulanspopulations by the P-element

(2015) Robert Kofler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tempo and Mode of Transposable Element Activity in Drosophila

(2015) Robert Kofler et al.   PLoS Genetics

Energy Homeostasis Control inDrosophilaAdipokinetic Hormone Mutants

(2015) Martina Gáliková et al.   GENETICS

Systems Genomics of Metabolic Phenotypes in Wild-Type Drosophila melanogaster

(2014) Laura K. Reed et al.   GENETICS

Stability and Response of Polygenic Traits to Stabilizing Selection and Mutation

(2014) Harold P. de Vladar et al.   GENETICS

Inbreeding effects on standard metabolic rate investigated at cold, benign and hot temperatures in Drosophila melanogaster

(2014) Palle Jensen et al.   JOURNAL OF INSECT PHYSIOLOGY

Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving ExperimentalDrosophila melanogasterPopulations

(2014) Susanne U. Franssen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae

(2014) Molly K. Burke et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome assembly and annotation of aDrosophila simulansstrain from Madagascar

(2014) Nicola Palmieri et al.   Molecular Ecology Resources

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Maximum Likelihood Estimation of Frequencies of Known Haplotypes from Pooled Sequence Data

(2013) D. Kessner et al.   MOLECULAR BIOLOGY AND EVOLUTION

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations ofDrosophila melanogaster

(2013) Martin Kapun et al.   MOLECULAR ECOLOGY

Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies

(2012) R. Kofler et al.   BIOINFORMATICS

Finding genes and variants for lipid levels after genome-wide association analysis

(2012) Cristen J. Willer et al.   CURRENT OPINION IN LIPIDOLOGY

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Genome-Wide Association Studies Reveal a Simple Genetic Basis of Resistance to Naturally Coevolving Viruses in Drosophila melanogaster

(2012) Michael M. Magwire et al.   PLoS Genetics

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

PoolHap: Inferring Haplotype Frequencies from Pooled Samples by Next Generation Sequencing

(2011) Quan Long et al.   PLoS One

Reliable Drosophila Body Fat Quantification by a Coupled Colorimetric Assay

(2011) Anja Hildebrandt et al.   PLoS One

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Genome-wide association analysis identifies multiple loci related to resting heart rate

(2010) M. Eijgelsheim et al.   HUMAN MOLECULAR GENETICS

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Selective Sweep at a Quantitative Trait Locus in the Presence of Background Genetic Variation

(2008) Luis-Miguel Chevin et al.   GENETICS

Gene expression variation in African and European populations of Drosophila melanogaster

(2008) Stephan Hutter et al.   GENOME BIOLOGY