Quantifying Selection with Pool-Seq Time Series Data

Clear: Composition of Likelihoods for Evolve and Resequence Experiments

(2017) Arya Iranmehr et al.   GENETICS

Clear: Composition of Likelihoods for Evolve and Resequence Experiments

(2017) Arya Iranmehr et al.   GENETICS

An Approximate Markov Model for the Wright–Fisher Diffusion and Its Application to Time Series Data

(2016) Anna Ferrer-Admetlla et al.   GENETICS

Bayesian Inference of Natural Selection from Allele Frequency Time Series

(2016) Joshua G. Schraiber et al.   GENETICS

Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution

(2016) A. Jonas et al.   GENETICS

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

The Effects of Population Size Histories on Estimates of Selection Coefficients from Time-Series Genetic Data

(2016) Ethan M. Jewett et al.   MOLECULAR BIOLOGY AND EVOLUTION

Tempo and mode of genome evolution in a 50,000-generation experiment

(2016) Olivier Tenaillon et al.   NATURE

Sex speeds adaptation by altering the dynamics of molecular evolution

(2016) Michael J. McDonald et al.   NATURE

Quantifying evolutionary dynamics from variant-frequency time series

(2016) Bhavin S. Khatri   Scientific Reports

An Approximate Markov Model for the Wright–Fisher Diffusion and Its Application to Time Series Data

(2016) Anna Ferrer-Admetlla et al.   GENETICS

Bayesian Inference of Natural Selection from Allele Frequency Time Series

(2016) Joshua G. Schraiber et al.   GENETICS

Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines

(2016) Philippa C. Griffin et al.   GENETICS

Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits

(2015) Darren Kessner et al.   GENETICS

Fifteen years of genomewide scans for selection: trends, lessons and unaddressed genetic sources of complication

(2015) Ryan J. Haasl et al.   MOLECULAR ECOLOGY

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Multi-locus Analysis of Genomic Time Series Data from Experimental Evolution

(2015) Jonathan Terhorst et al.   PLoS Genetics

Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits

(2015) Darren Kessner et al.   GENETICS

A novel spectral method for inferring general diploid selection from time series genetic data

(2014) Matthias Steinrücken et al.   Annals of Applied Statistics

On Detecting Incomplete Soft or Hard Selective Sweeps Using Haplotype Structure

(2014) Anna Ferrer-Admetlla et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Power to Detect Quantitative Trait Loci Using Resequenced, Experimentally Evolved Populations of Diploid, Sexual Organisms

(2014) James G. Baldwin-Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Standing Genetic Variation Drives Repeatable Experimental Evolution in Outcrossing Populations of Saccharomyces cerevisiae

(2014) Molly K. Burke et al.   MOLECULAR BIOLOGY AND EVOLUTION

WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data

(2014) Matthieu Foll et al.   Molecular Ecology Resources

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

(2014) Hans D Daetwyler et al.   NATURE GENETICS

Sequencing pools of individuals — mining genome-wide polymorphism data without big funding

(2014) Christian Schlötterer et al.   NATURE REVIEWS GENETICS

Influenza Virus Drug Resistance: A Time-Sampled Population Genetics Perspective

(2014) Matthieu Foll et al.   PLoS Genetics

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Estimating Selection Coefficients in Spatially Structured Populations from Time Series Data of Allele Frequencies

(2013) I. Mathieson et al.   GENETICS

A Guide for the Design of Evolve and Resequencing Studies

(2013) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

(2013) Pavlos Pavlidis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments

(2013) Ray Tobler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

Parallel Selection Mapping Using Artificially Selected Mice Reveals Body Weight Control Loci

(2012) Yingguang Frank Chan et al.   CURRENT BIOLOGY

Investigating Natural Variation in Drosophila Courtship Song by the Evolve and Resequence Approach

(2012) T. L. Turner et al.   GENETICS

Estimating Allele Age and Selection Coefficient from Time-Serial Data

(2012) A.-S. Malaspinas et al.   GENETICS

Recent Progress in Polymorphism-Based Population Genetic Inference

(2012) Jessica L. Crisci et al.   JOURNAL OF HEREDITY

Adaptation ofDrosophilato a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles

(2012) PABLO OROZCO-terWENGEL et al.   MOLECULAR ECOLOGY

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

Quantifying Selection Acting on a Complex Trait Using Allele Frequency Time Series Data

(2011) C. J. R. Illingworth et al.   MOLECULAR BIOLOGY AND EVOLUTION

Experimental selection of hypoxia-tolerant Drosophila melanogaster

(2011) D. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Second-Order Selection for Evolvability in a Large Escherichia coli Population

(2011) R. J. Woods et al.   SCIENCE

Genotypic and Histological Evolution of Lung Cancers Acquiring Resistance to EGFR Inhibitors

(2011) L. V. Sequist et al.   Science Translational Medicine

Population-Based Resequencing of Experimentally Evolved Populations Reveals the Genetic Basis of Body Size Variation in Drosophila melanogaster

(2011) Thomas L. Turner et al.   PLoS Genetics

The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples

(2010) Andreas Futschik et al.   GENETICS

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Estimation of 2Nes From Temporal Allele Frequency Data

(2008) J. P. Bollback et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS