The Molecular Diversity of Adaptive Convergence

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

(2011) H.-H. Chou et al.   SCIENCE

Epistasis between Beneficial Mutations and the Phenotype-to-Fitness Map for a ssDNA Virus

(2011) Darin R. Rokyta et al.   PLoS Genetics

On measuring selection in experimental evolution

(2010) L.-M. Chevin   Biology Letters

Genome-wide analysis of a long-term evolution experiment with Drosophila

(2010) Molly K. Burke et al.   NATURE

An allosteric mechanism of Rho-dependent transcription termination

(2010) Vitaly Epshtein et al.   NATURE

EcoCyc: a comprehensive database of Escherichia coli biology

(2010) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

(2010) T. M. Conrad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Causes and evolutionary significance of genetic convergence

(2010) Pascal-Antoine Christin et al.   TRENDS IN GENETICS

Transition from Positive to Neutral in Mutation Fixation along with Continuing Rising Fitness in Thermal Adaptive Evolution

(2010) Toshihiko Kishimoto et al.   PLoS Genetics

Phenotypic connections in surprising places

(2010) Bolan Linghu et al.   GENOME BIOLOGY

RodZ, a new player in bacterial cell morphogenesis

(2009) Kenn Gerdes   EMBO JOURNAL

The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA

(2009) Xiao Yang et al.   EMBO REPORTS

Genome Sequences of Escherichia coli B strains REL606 and BL21(DE3)

(2009) Haeyoung Jeong et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Experimental evolution reveals natural selection on standing genetic variation

(2009) Henrique Teotónio et al.   NATURE GENETICS

The Modular Organization of Protein Interactions in Escherichia coli

(2009) José M. Peregrín-Alvarez et al.   PLoS Computational Biology

RNA Polymerase Elongation Factors

(2008) Jeffrey W. Roberts et al.   Annual Review of Microbiology

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile data

(2008) Tao Xu et al.   BMC BIOINFORMATICS

Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance

(2008) Richard A. Notebaart et al.   PLoS Computational Biology