Causes of molecular convergence and parallelism in protein evolution
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Title
Causes of molecular convergence and parallelism in protein evolution
Authors
Keywords
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Journal
NATURE REVIEWS GENETICS
Volume 17, Issue 4, Pages 239-250
Publisher
Springer Nature
Online
2016-03-14
DOI
10.1038/nrg.2016.11
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Note: Only part of the references are listed.- Changing preferences: deformation of single position amino acid fitness landscapes and evolution of proteins
- (2015) Georgii A. Bazykin Biology Letters
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- (2015) Edmund D. Brodie III et al. BRAIN BEHAVIOR AND EVOLUTION
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- (2015) Matthew W. Hahn et al. EVOLUTION
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- (2015) Richard A. Goldstein et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2015) Z. Zou et al. MOLECULAR BIOLOGY AND EVOLUTION
- Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals
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- Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?
- (2015) Zhengting Zou et al. MOLECULAR BIOLOGY AND EVOLUTION
- Identification of cis-suppression of human disease mutations by comparative genomics
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- (2015) Michael S. Packer et al. NATURE REVIEWS GENETICS
- Contingency and entrenchment in protein evolution under purifying selection
- (2015) Premal Shah et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Contribution of a mutational hot spot to hemoglobin adaptation in high-altitude Andean house wrens
- (2015) Spencer C. Galen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Widespread convergence in toxin resistance by predictable molecular evolution
- (2015) Beata Ujvari et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bypass of genetic constraints during mutator evolution to antibiotic resistance
- (2015) A. Couce et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level
- (2015) Chandrasekhar Natarajan et al. PLoS Genetics
- Reverse evolution leads to genotypic incompatibility despite functional and active site convergence
- (2015) Miriam Kaltenbach et al. eLife
- The Molecular Basis of Phenotypic Convergence
- (2014) Erica Bree Rosenblum et al. Annual Review of Ecology Evolution and Systematics
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- (2014) Dmitry N Ivankov et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
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- (2014) Martijn F. Schenk et al. Evolutionary Applications
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- (2014) Danielle M. Tufts et al. MOLECULAR BIOLOGY AND EVOLUTION
- Historical contingency and its biophysical basis in glucocorticoid receptor evolution
- (2014) Michael J. Harms et al. NATURE
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- (2014) David M. McCandlish et al. QUARTERLY REVIEW OF BIOLOGY
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- (2014) Shozo Yokoyama et al. PLoS Genetics
- Lack of conventional oxygen-linked proton and anion binding sites does not impair allosteric regulation of oxygen binding in dwarf caiman hemoglobin
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- (2013) Manfred T. Reetz ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
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- (2013) Daniel M Weinreich et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
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- (2013) I. G. Revsbech et al. JOURNAL OF EXPERIMENTAL BIOLOGY
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- (2013) Martijn F. Schenk et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2010) Matthew A. Streisfeld et al. EVOLUTION
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- (2010) Luis-Miguel Chevin et al. EVOLUTION
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- (2010) J. da Silva et al. GENETICS
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- (2010) K. M. Brown et al. MOLECULAR BIOLOGY AND EVOLUTION
- Sequence space and the ongoing expansion of the protein universe
- (2010) Inna S. Povolotskaya et al. NATURE
- Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
- (2010) J. D. Bloom et al. SCIENCE
- Causes and evolutionary significance of genetic convergence
- (2010) Pascal-Antoine Christin et al. TRENDS IN GENETICS
- Pervasive Cryptic Epistasis in Molecular Evolution
- (2010) Mark Lunzer et al. PLoS Genetics
- Stability effects of mutations and protein evolvability
- (2009) Nobuhiko Tokuriki et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The causes of repeated genetic evolution
- (2009) Nicolas Gompel et al. DEVELOPMENTAL BIOLOGY
- Climbing Mount Probable: Mutation as a Cause of Nonrandomness in Evolution
- (2009) A. Stoltzfus et al. JOURNAL OF HEREDITY
- Compensated Pathogenic Deviations: Analysis of Structural Effects
- (2009) Anja Barešić et al. JOURNAL OF MOLECULAR BIOLOGY
- The Genetics of Adaptation for Eight Microvirid Bacteriophages
- (2009) Darin R. Rokyta et al. JOURNAL OF MOLECULAR EVOLUTION
- Parallel evolution in the major haemoglobin genes of eight species of Andean waterfowl
- (2009) K. G. McCRACKEN et al. MOLECULAR ECOLOGY
- An epistatic ratchet constrains the direction of glucocorticoid receptor evolution
- (2009) Jamie T. Bridgham et al. NATURE
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- (2009) Philip A. Romero et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Stepwise acquisition of pyrimethamine resistance in the malaria parasite
- (2009) E. R. Lozovsky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- In the light of directed evolution: Pathways of adaptive protein evolution
- (2009) J. D. Bloom et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Evidence for an ancient adaptive episode of convergent molecular evolution
- (2009) T. A. Castoe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Is Genetic Evolution Predictable?
- (2009) D. L. Stern et al. SCIENCE
- Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series
- (2008) Igor B Rogozin et al. Biology Direct
- THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?
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- (2008) S. Yokoyama et al. GENETICS
- Frequent and Widespread Parallel Evolution of Protein Sequences
- (2008) A. Rokas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates
- (2008) S. Yokoyama et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hemiplasy: A New Term in the Lexicon of Phylogenetics
- (2008) John C. Avise et al. SYSTEMATIC BIOLOGY
- How Protein Stability and New Functions Trade Off
- (2008) Nobuhiko Tokuriki et al. PLoS Computational Biology
- Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation?
- (2007) J ARENDT et al. TRENDS IN ECOLOGY & EVOLUTION
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