Diatom eDNA metabarcoding and morphological methods for bioassessment of karstic river

An optimised method for intact nuclei isolation from diatoms

(2021) Rossella Annunziata et al.   Scientific Reports

Ciliates (Alveolata, Ciliophora) as bioindicators of environmental pressure: A karstic river case

(2021) Antonija Kulaš et al.   ECOLOGICAL INDICATORS

Cyprus’ diatom diversity and the association of environmental and anthropogenic influences for ecological assessment of rivers using DNA metabarcoding

(2021) Panayiota Pissaridou et al.   CHEMOSPHERE

DNA metabarcoding and morphological methods show complementary patterns in the metacommunity organization of lentic epiphytic diatoms

(2021) Alejandro Nistal-García et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Assessing ecological status in karstic lakes through the integration of phytoplankton functional groups, morphological approach and environmental DNA metabarcoding

(2021) Nikola Hanžek et al.   ECOLOGICAL INDICATORS

Applicability of diatom metabarcoding in the ecological status assessment of Hungarian lotic and soda pan habitats

(2021) Mónika Duleba et al.   ECOLOGICAL INDICATORS

eDNA metabarcoding revealed differential structures of aquatic communities in a dynamic freshwater ecosystem shaped by habitat heterogeneity

(2021) Ruili Xie et al.   ENVIRONMENTAL RESEARCH

Impact of metal ions on PCR inhibition and RT-PCR efficiency

(2020) Agnieszka Kuffel et al.   INTERNATIONAL JOURNAL OF LEGAL MEDICINE

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers

(2020) Javier Pérez-Burillo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Analysis of the type material of Achnanthes hauckiana Grunow (Achnanthaceae, Bacillariophyceae)

(2020) Antonija Kulaš et al.   Botany Letters

Diatom β-diversity in streams increases with spatial scale and decreases with nutrient enrichment across regional to sub-continental scales

(2019) Thibault Leboucher et al.   JOURNAL OF BIOGEOGRAPHY

On some common and new cavum-bearing Planothidium (Bacillariophyta) species from freshwater

(2019) Carlos E. Wetzel et al.   Fottea

Connecting the morphological and molecular species concepts to facilitate species identification within the genus Fragilaria (Bacillariophyta)

(2019) Maria Kahlert et al.   JOURNAL OF PHYCOLOGY

Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms

(2019) Andreia Mortágua et al.   ECOLOGICAL INDICATORS

Diat.barcode, an open-access curated barcode library for diatoms

(2019) Frédéric Rimet et al.   Scientific Reports

Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software

(2019) Sinziana F. Rivera et al.   ECOLOGICAL INDICATORS

Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units’ ecological profiles

(2018) François Keck et al.   Molecular Ecology Resources

Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

(2018) Frédéric Rimet et al.   ORGANISMS DIVERSITY & EVOLUTION

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

Benthos-drift relationships as proxies for the detection of the most suitable bioindicator taxa in flowing waters – a pilot-study within a Mediterranean karst river

(2018) Mirela Sertić Perić et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Description of a new diatom genus Dorofeyukea gen. nov. with remarks on phylogeny of the family Stauroneidaceae

(2018) Maxim Kulikovskiy et al.   JOURNAL OF PHYCOLOGY

The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)

(2018) Kálmán Tapolczai et al.   Ecology and Evolution

Molecular and morphological characterization of the Achnanthidium minutissimum complex (Bacillariophyta) in Petuniabukta (Spitsbergen, High Arctic) including the description of A. digitatum sp. nov.

(2017) Eveline Pinseel et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

(2017) S. F. Rivera et al.   HYDROBIOLOGIA

Inorganic carbon dominates total dissolved carbon concentrations and fluxes in British rivers: Application of the THINCARB model – Thermodynamic modelling of inorganic carbon in freshwaters

(2017) Helen P. Jarvie et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

(2017) Valentin Vasselon et al.   Freshwater Science

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

(2017) Valentin Vasselon et al.   Freshwater Science

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing

(2017) Luisa W. Hugerth et al.   Frontiers in Microbiology

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Defining centric diatoms of most relevant phytoplankton functional groups in deep karst lakes

(2016) Marija Gligora Udovič et al.   HYDROBIOLOGIA

Quality assurance of diatom counts in Europe: towards harmonized datasets

(2016) Maria Kahlert et al.   HYDROBIOLOGIA

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

Small diatoms (Bacillariophyta) in cultures from the Styx River, New Zealand, including descriptions of three new species

(2015) PHIL M. NOVIS et al.   Phytotaxa

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

(2014) Jonas Zimmermann et al.   Molecular Ecology Resources

Transport Distance of Invertebrate Environmental DNA in a Natural River

(2014) Kristy Deiner et al.   PLoS One

Karst water resources in a changing world: Review of hydrological modeling approaches

(2014) A. Hartmann et al.   REVIEWS OF GEOPHYSICS

Morphological and molecular phylogenetic studies onFistulifera saprophila

(2013) Aleksandra Zgrundo et al.   DIATOM RESEARCH

Biodiversity patterns in a macroinvertebrate community of a temporary pond network

(2013) Margarita Florencio et al.   Insect Conservation and Diversity

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)

(2010) Rosa Trobajo et al.   EUROPEAN JOURNAL OF PHYCOLOGY

The role of environmental variables in structuring epiphytic and epilithic diatom assemblages in springs and streams of the Dolomiti Bellunesi National Park (south-eastern Alps)

(2009) Marco Cantonati et al.   Fundamental and Applied Limnology

A Study of PCR Inhibition Mechanisms Using Real Time PCR

(2009) Kerry L. Opel et al.   JOURNAL OF FORENSIC SCIENCES

Spatial distribution of trace metals in the Krka River, Croatia: An example of the self-purification

(2008) Neven Cukrov et al.   CHEMOSPHERE

Validation of diatoms as proxies for phytobenthos when assessing ecological status in lakes

(2008) M. G. Kelly et al.   HYDROBIOLOGIA

Ecological variation within Sellaphora species complexes (Bacillariophyceae): specialists or generalists?

(2008) Aloisie Poulíčková et al.   HYDROBIOLOGIA

On Student's 1908 Article “The Probable Error of a Mean”

(2008) S. L Zabell   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION