Assessing ecological status in karstic lakes through the integration of phytoplankton functional groups, morphological approach and environmental DNA metabarcoding

Comparative analyses of the V4 and V9 regions of 18S rDNA for the extant eukaryotic community using the Illumina platform

(2020) Jaeho Choi et al.   Scientific Reports

Combining morphological and metabarcoding approaches reveals the freshwater eukaryotic phytoplankton community

(2020) Shouliang Huo et al.   Environmental Sciences Europe

Freshwater phytoplankton diversity: models, drivers and implications for ecosystem properties

(2020) Gábor Borics et al.   HYDROBIOLOGIA

Executing multi-taxa eDNA ecological assessment via traditional metrics and interactive networks

(2020) Mathew Seymour et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Phytoplankton composition with an emphasis of Cyanobacteria and their toxins as an indicator for the ecological status of Lake Vaya (Bulgaria) – part of the Via Pontica migration route

(2020) Ivanka Teneva et al.   Biodiversity Data Journal

DNA metabarcoding adds valuable information for management of biodiversity in roadside stormwater ponds

(2019) Zhenhua Sun et al.   Ecology and Evolution

Assessing the ecological effects of hydromorphological pressures on European lakes

(2019) Sandra Poikane et al.   Inland Waters

Multiple stressor effects on biological quality elements in the Ebro River: Present diagnosis and predicted responses

(2018) Albert Herrero et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

People, pollution and pathogens – Global change impacts in mountain freshwater ecosystems

(2018) Dirk S. Schmeller et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive

(2018) Daniel Hering et al.   WATER RESEARCH

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

Environmental DNA reveals quantitative patterns of fish biodiversity in large rivers despite its downstream transportation

(2018) Didier Pont et al.   Scientific Reports

Embracing Environmental Genomics and Machine Learning for Routine Biomonitoring

(2018) Tristan Cordier et al.   TRENDS IN MICROBIOLOGY

Comparison of coastal phytoplankton composition estimated from the V4 and V9 regions of the 18S rRNA gene with a focus on photosynthetic groups and especially Chlorophyta

(2017) Margot Tragin et al.   ENVIRONMENTAL MICROBIOLOGY

Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring

(2017) Laure Apothéloz-Perret-Gentil et al.   Molecular Ecology Resources

Rise of toxic cyanobacterial blooms in temperate freshwater lakes: causes, correlations and possible countermeasures

(2017) Stefanie N. Scholz et al.   TOXICOLOGICAL AND ENVIRONMENTAL CHEMISTRY

Performance of the Phytoplankton Index for Lakes (IPLAC): A multimetric phytoplankton index to assess the ecological status of water bodies in France

(2016) Christophe Laplace-Treyture et al.   ECOLOGICAL INDICATORS

Defining centric diatoms of most relevant phytoplankton functional groups in deep karst lakes

(2016) Marija Gligora Udovič et al.   HYDROBIOLOGIA

Is metabarcoding suitable for estuarine plankton monitoring? A comparative study with microscopy

(2016) David Abad et al.   MARINE BIOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Does eutrophication-driven evolution change aquatic ecosystems?

(2016) Timothy J. Alexander et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

Intercalibration of aquatic ecological assessment methods in the European Union: Lessons learned and way forward

(2014) Sandra Poikane et al.   ENVIRONMENTAL SCIENCE & POLICY

Use of High Throughput Sequencing and Light Microscopy Show Contrasting Results in a Study of Phytoplankton Occurrence in a Freshwater Environment

(2014) Xi Xiao et al.   PLoS One

Ecological status assessment of European lakes: a comparison of metrics for phytoplankton, macrophytes, benthic invertebrates and fish

(2013) Anne Lyche-Solheim et al.   HYDROBIOLOGIA

Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach

(2013) Alexander Eiler et al.   PLoS One

Growth and temperature-related phenotypic plasticity in the cyanobacteriumCylindrospermopsis raciborskii

(2012) Maria Carolina S. Soares et al.   PHYCOLOGICAL RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Three hundred ways to assess Europe's surface waters: An almost complete overview of biological methods to implement the Water Framework Directive

(2011) Sebastian Birk et al.   ECOLOGICAL INDICATORS

Monitoring of phytoplankton community structure using terminal restriction fragment length polymorphism (T-RFLP)

(2010) Sungbae Joo et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Population of Aphanizomenon from the Gulf of Gdańsk (Southern Baltic Sea): differences in phenotypic and genotypic characteristics

(2008) Katarzyna A. Palińska et al.   HYDROBIOLOGIA

Use and misuse in the application of the phytoplankton functional classification: a critical review with updates

(2008) Judit Padisák et al.   HYDROBIOLOGIA