Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring
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Title
Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring
Authors
Keywords
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Journal
Methods in Ecology and Evolution
Volume 9, Issue 4, Pages 1060-1069
Publisher
Wiley
Online
2017-12-26
DOI
10.1111/2041-210x.12960
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Note: Only part of the references are listed.- Freshwater biomonitoring in the Information Age
- (2017) François Keck et al. FRONTIERS IN ECOLOGY AND THE ENVIRONMENT
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- (2017) Laure Apothéloz-Perret-Gentil et al. Molecular Ecology Resources
- The use of diatoms in ecotoxicology and bioassessment: Insights, advances and challenges
- (2017) Lalit K. Pandey et al. WATER RESEARCH
- Sorting things out: Assessing effects of unequal specimen biomass on DNA metabarcoding
- (2017) Vasco Elbrecht et al. Ecology and Evolution
- Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?
- (2017) Valentin Vasselon et al. Freshwater Science
- Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?
- (2017) Valentin Vasselon et al. Freshwater Science
- Protist metabarcoding and environmental biomonitoring: Time for change
- (2016) J. Pawlowski et al. EUROPEAN JOURNAL OF PROTISTOLOGY
- Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities
- (2016) Régis Vivien et al. PLoS One
- Major evolutionary transitions of life, metabolic scaling and the number and size of mitochondria and chloroplasts
- (2016) Jordan G. Okie et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring
- (2016) Frédéric Rimet et al. Database-The Journal of Biological Databases and Curation
- A theoretical investigation of the diatom cell size reduction–restitution cycle
- (2015) Inga Hense et al. ECOLOGICAL MODELLING
- Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data
- (2015) Joana Amorim Visco et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Factors affecting growth and viability of natural diatom populations in the meso-eutrophic Římov Reservoir (Czech Republic)
- (2015) Petr Znachor et al. HYDROBIOLOGIA
- Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material
- (2015) Austen C. Thomas et al. Molecular Ecology Resources
- Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding
- (2015) Nathan T. Evans et al. Molecular Ecology Resources
- Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities
- (2015) BoonFei Tan et al. Frontiers in Microbiology
- Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
- (2015) Vasco Elbrecht et al. PLoS One
- Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
- (2014) Jonas Zimmermann et al. Molecular Ecology Resources
- Is DNA Barcoding Actually Cheaper and Faster than Traditional Morphological Methods: Results from a Survey of Freshwater Bioassessment Efforts in the United States?
- (2014) Eric D. Stein et al. PLoS One
- Conserved Gene Order and Expanded Inverted Repeats Characterize Plastid Genomes of Thalassiosirales
- (2014) Jamal S. M. Sabir et al. PLoS One
- When is Sampling Complete? The Effects of Geographical Range and Marker Choice on Perceived Diversity in Nitzschia palea (Bacillariophyta)
- (2014) Frédéric Rimet et al. PROTIST
- A next-generation sequencing approach to river biomonitoring using benthic diatoms
- (2014) Lenaïg Kermarrec et al. Freshwater Science
- CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction
- (2014) Florent E Angly et al. Microbiome
- Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?
- (2013) Bruce E. Deagle et al. Molecular Ecology Resources
- Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
- (2013) L. Kermarrec et al. Molecular Ecology Resources
- Can Abundance of Protists Be Inferred from Sequence Data: A Case Study of Foraminifera
- (2013) Alexandra A-T. Weber et al. PLoS One
- Dead or alive? Viability assessment of micro- and mesoplankton
- (2012) E.-M. Zetsche et al. JOURNAL OF PLANKTON RESEARCH
- Environmental DNA
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
- (2012) Markus Lommer et al. GENOME BIOLOGY
- Recent views on river pollution and diatoms
- (2011) Frédéric Rimet HYDROBIOLOGIA
- Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids
- (2011) Alexander H Treusch et al. ISME Journal
- Quantifying microbial communities with 454 pyrosequencing: does read abundance count?
- (2010) ANTHONY S. AMEND et al. MOLECULAR ECOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Variable amounts of DNA related to the size of chloroplasts III. Biochemical determinations of DNA amounts per organelle
- (2009) Uwe Rauwolf et al. MOLECULAR GENETICS AND GENOMICS
- Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR
- (2008) A. Godhe et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- INTER- AND INTRASPECIFIC RELATIONSHIPS BETWEEN NUCLEAR DNA CONTENT AND CELL SIZE IN SELECTED MEMBERS OF THE CENTRIC DIATOM GENUSTHALASSIOSIRA(BACILLARIOPHYCEAE)
- (2008) Peter von Dassow et al. JOURNAL OF PHYCOLOGY
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