Cyprus’ diatom diversity and the association of environmental and anthropogenic influences for ecological assessment of rivers using DNA metabarcoding

DNA metabarcoding effectively quantifies diatom responses to nutrients in streams

(2020) Nathan J. Smucker et al.   ECOLOGICAL APPLICATIONS

Benthic diatom community dynamics in Mediterranean intermittent streams: Effects of water availability and their potential as indicators of dry-phase ecological status

(2020) Maria Helena Novais et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers

(2020) Javier Pérez-Burillo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A taxonomy-free approach based on machine learning to assess the quality of rivers with diatoms

(2020) Maria João Feio et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Impacts of multiple stressors on freshwater biota across spatial scales and ecosystems

(2020) Sebastian Birk et al.   Nature Ecology & Evolution

Overwhelming role of hydrology-related variables and river types in driving diatom species distribution and community assemblage in streams in Cyprus

(2020) Marco Cantonati et al.   ECOLOGICAL INDICATORS

Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

(2020) M. Sagova-Mareckova et al.   WATER RESEARCH

Autumn drought drives functional diversity of benthic diatom assemblages of continental intermittent streams

(2019) Viktória B-Béres et al.   ADVANCES IN WATER RESOURCES

Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding

(2019) Teofana Chonova et al.   Frontiers in Microbiology

Dynamic contributions of intermittent and perennial streams to fish beta diversity in dryland rivers

(2019) Jane S. Rogosch et al.   JOURNAL OF BIOGEOGRAPHY

Diat.barcode, an open-access curated barcode library for diatoms

(2019) Frédéric Rimet et al.   Scientific Reports

Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software

(2019) Sinziana F. Rivera et al.   ECOLOGICAL INDICATORS

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biomonitoring of intermittent rivers and ephemeral streams in Europe: Current practice and priorities to enhance ecological status assessments

(2018) Rachel Stubbington et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive

(2018) Daniel Hering et al.   WATER RESEARCH

Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

(2018) Valentin Vasselon et al.   Methods in Ecology and Evolution

The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)

(2018) Kálmán Tapolczai et al.   Ecology and Evolution

A comparison of biotic groups as dry-phase indicators of ecological quality in intermittent rivers and ephemeral streams

(2018) Rachel Stubbington et al.   ECOLOGICAL INDICATORS

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

(2017) S. F. Rivera et al.   HYDROBIOLOGIA

Biodiversity in perennial and intermittent rivers: a meta-analysis

(2017) Maria Soria et al.   OIKOS

Diatom flora in Mediterranean streams: flow intermittency threatens endangered species

(2016) Elisa Falasco et al.   BIODIVERSITY AND CONSERVATION

Global occurrence of anti-infectives in contaminated surface waters: Impact of income inequality between countries

(2015) Pedro A. Segura et al.   ENVIRONMENT INTERNATIONAL

Intermittent Rivers: A Challenge for Freshwater Ecology

(2014) Thibault Datry et al.   BIOSCIENCE

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Catchment-scale biogeography of riverine bacterioplankton

(2014) Daniel S Read et al.   ISME Journal

Fluvial network organization imprints on microbial co-occurrence networks

(2014) S. Widder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Water Scarcity in Cyprus: A Review and Call for Integrated Policy

(2014) Anastasia Sofroniou et al.   Water

Morphological and molecular phylogenetic studies onFistulifera saprophila

(2013) Aleksandra Zgrundo et al.   DIATOM RESEARCH

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

(2013) L. Kermarrec et al.   Molecular Ecology Resources

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Intercalibrating classifications of ecological status: Europe's quest for common management objectives for aquatic ecosystems

(2013) S. Birk et al.   SCIENCE OF THE TOTAL ENVIRONMENT

NG6: Integrated next generation sequencing storage and processing environment

(2012) Jérôme Mariette et al.   BMC GENOMICS

Recent views on river pollution and diatoms

(2011) Frédéric Rimet   HYDROBIOLOGIA

Barcoding Diatoms: Exploring Alternatives to COI-5P

(2011) Sarah E. Hamsher et al.   PROTIST

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The validation of common European class boundaries for river benthic macroinvertebrates to facilitate the intercalibration process of the Water Framework Directive

(2009) Stefania Erba et al.   HYDROBIOLOGIA

Harmonization is more important than experience—results of the first Nordic–Baltic diatom intercalibration exercise 2007 (stream monitoring)

(2008) Maria Kahlert et al.   JOURNAL OF APPLIED PHYCOLOGY