Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies
Authors
Keywords
-
Journal
Molecular Ecology Resources
Volume 15, Issue 3, Pages 526-542
Publisher
Wiley
Online
2014-09-30
DOI
10.1111/1755-0998.12336
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Does the Cosmopolitan Diatom Gomphonema parvulum (Kützing) Kützing Have a Biogeography?
- (2014) Nelida Abarca et al. PLoS One
- Taxonomic Reference Libraries for Environmental Barcoding: A Best Practice Example from Diatom Research
- (2014) Jonas Zimmermann et al. PLoS One
- A next-generation sequencing approach to river biomonitoring using benthic diatoms
- (2014) Lenaïg Kermarrec et al. Freshwater Science
- The Ultrastructure ofGomphonema augurandGomphonema gautieri(Bacillariophyta)
- (2013) Bart Van De Vijver et al. CRYPTOGAMIE ALGOLOGIE
- An Inordinate Fondness? The Number, Distributions, and Origins of Diatom Species
- (2013) David G. Mann et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms
- (2013) L. Kermarrec et al. Molecular Ecology Resources
- Barcoding in the dark?: A critical view of the sufficiency of zoological DNA barcoding databases and a plea for broader integration of taxonomic knowledge
- (2013) Sebastian Kvist MOLECULAR PHYLOGENETICS AND EVOLUTION
- Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach
- (2013) Alexander Eiler et al. PLoS One
- First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kützing) Kützing Complex (Bacillariophyta)
- (2013) Lenaïg Kermarrec et al. PROTIST
- Illumina metabarcoding of a soil fungal community
- (2013) Philipp-André Schmidt et al. SOIL BIOLOGY & BIOCHEMISTRY
- The future of environmental DNA in ecology
- (2012) NIGEL G. YOCCOZ MOLECULAR ECOLOGY
- Next-generation sequencing technologies for environmental DNA research
- (2012) SHADI SHOKRALLA et al. MOLECULAR ECOLOGY
- Environmental DNA
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Hidden diversity in diatoms of Kenyan Lake Naivasha: a genetic approach detects temporal variation
- (2012) KATHLEEN R. STOOF-LEICHSENRING et al. MOLECULAR ECOLOGY
- Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Multi-locus species delimitation in closely related animals and fungi: one marker is not enough
- (2012) JULIAN R. DUPUIS et al. MOLECULAR ECOLOGY
- Towards next-generation biodiversity assessment using DNA metabarcoding
- (2012) PIERRE TABERLET et al. MOLECULAR ECOLOGY
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Pitfalls of Establishing DNA Barcoding Systems in Protists: The Cryptophyceae as a Test Case
- (2012) Kerstin Hoef-Emden PLoS One
- High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
- (2012) Hirokazu Toju et al. PLoS One
- Distance and Character-Based Evaluation of the V4 Region of the 18S rRNA Gene for the Identification of Diatoms (Bacillariophyceae)
- (2012) Ian A. Luddington et al. PLoS One
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- Coalescent-based species delimitation in an integrative taxonomy
- (2012) Matthew K. Fujita et al. TRENDS IN ECOLOGY & EVOLUTION
- CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms
- (2012) Jan Pawlowski et al. PLOS BIOLOGY
- Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
- (2012) Mehrdad Hajibabaei et al. BMC ECOLOGY
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
- Coherent dynamics and association networks among lake bacterioplankton taxa
- (2011) Alexander Eiler et al. ISME Journal
- Survey of the Efficacy of a Short Fragment of the rbcL Gene as a Supplemental DNA Barcode for Diatoms
- (2011) Michael L. MacGillivary et al. JOURNAL OF EUKARYOTIC MICROBIOLOGY
- Five years of FISH-BOL: Brief status report
- (2011) Sven Becker et al. Mitochondrial DNA
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Two decades of describing the unseen majority of aquatic microbial diversity
- (2011) LUCIE ZINGER et al. MOLECULAR ECOLOGY
- DNA barcoding of the ichthyofauna of Taal Lake, Philippines
- (2011) SEAN V. L. AQUILINO et al. Molecular Ecology Resources
- Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols
- (2011) Jonas Zimmermann et al. ORGANISMS DIVERSITY & EVOLUTION
- How DNA Barcodes Complement Taxonomy and Explore Species Diversity: The Case Study of a Poorly Understood Marine Fauna
- (2011) Jun Chen et al. PLoS One
- Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing
- (2011) Jan Pawlowski et al. PLoS One
- Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
- (2011) Mehrdad Hajibabaei et al. PLoS One
- Origin and Evolution of the Canal Raphe System in Diatoms
- (2011) Elizabeth C. Ruck et al. PROTIST
- Barcoding Diatoms: Exploring Alternatives to COI-5P
- (2011) Sarah E. Hamsher et al. PROTIST
- When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths
- (2011) John Wilson et al. BMC ECOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
- (2010) Anke Behnke et al. ENVIRONMENTAL MICROBIOLOGY
- The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)
- (2010) Rosa Trobajo et al. EUROPEAN JOURNAL OF PHYCOLOGY
- A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA
- (2010) Markus Göker et al. Evolutionary Bioinformatics
- Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
- (2009) Thorsten Stoeck et al. BMC BIOLOGY
- Development of a diatom index of biotic integrity for acid mine drainage impacted streams
- (2009) Jason T. Zalack et al. ECOLOGICAL INDICATORS
- ECOLOGICAL DIFFERENTIATION BETWEEN SYMPATRIC PSEUDOCRYPTIC SPECIES IN THE ESTUARINE BENTHIC DIATOM NAVICULA PHYLLEPTA (BACILLARIOPHYCEAE)1
- (2009) Bart Vanelslander et al. JOURNAL OF PHYCOLOGY
- Science for managing ecosystem services: Beyond the Millennium Ecosystem Assessment
- (2009) S. R. Carpenter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation
- (2009) Michael T. Monaghan et al. SYSTEMATIC BIOLOGY
- Error Cascades in the Biological Sciences: The Unwanted Consequences of Using Bad Taxonomy in Ecology
- (2008) Alejandro Bortolus AMBIO
- Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)
- (2008) L. Guillou et al. ENVIRONMENTAL MICROBIOLOGY
- Ecological variation within Sellaphora species complexes (Bacillariophyceae): specialists or generalists?
- (2008) Aloisie Poulíčková et al. HYDROBIOLOGIA
- A MOLECULAR SYSTEMATIC APPROACH TO EXPLORE DIVERSITY WITHIN THESELLAPHORA PUPULASPECIES COMPLEX (BACILLARIOPHYTA)
- (2008) Katharine M. Evans et al. JOURNAL OF PHYCOLOGY
- Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata
- (2007) J Rach et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search