High levels of inbreeding with spatial and host‐associated structure in lice of an endangered freshwater seal

High levels of inbreeding with spatial and host‐associated structure in lice of an endangered freshwater seal

(2022) Stephany Virrueta Herrera et al.   MOLECULAR ECOLOGY

Genetic and demographic history define a conservation strategy for earth’s most endangered pinniped, the Mediterranean monk seal Monachus monachus

(2021) Alexandros A. Karamanlidis et al.   Scientific Reports

The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite

(2021) James G Baldwin-Brown et al.   G3-Genes Genomes Genetics

Parasites as conservation tools

(2021) Roderick B. Gagne et al.   CONSERVATION BIOLOGY

Mapping our knowledge on birds of prey population genetics

(2021) Marianne Gousy-Leblanc et al.   CONSERVATION GENETICS

Evidence for an Allee effect in a declining fur seal population

(2021) Rebecca Nagel et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Scaling the extinction vortex: Body size as a predictor of population dynamics close to extinction events

(2021) Nathan F. Williams et al.   Ecology and Evolution

Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites

(2021) Jorge Doña et al.   Frontiers in Microbiology

Anthropogenic disturbance favours generalist over specialist parasites in bird communities: Implications for risk of disease emergence

(2021) Guha Dharmarajan et al.   ECOLOGY LETTERS

Infection phenotypes of a coevolving parasite are highly diverse, structured, and specific

(2021) Maridel Fredericksen et al.   EVOLUTION

The long‐standing significance of genetic diversity in conservation

(2021) J. Andrew DeWoody et al.   MOLECULAR ECOLOGY

GenoDive v. 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

(2020) Patrick G. Meirmans   Molecular Ecology Resources

Comparing the Performance of Microsatellites and RADseq in Population Genetic Studies: Analysis of Data for Pike (Esox lucius) and a Synthesis of Previous Studies

(2020) Johanna Sunde et al.   Frontiers in Genetics

Methods for the assessment and conservation of threatened animal parasites

(2020) Mackenzie L. Kwak et al.   BIOLOGICAL CONSERVATION

Parasites are endangered by the conservation of their hosts: Meta-analyses of the effect of host captivity on the odds of parasite infection

(2020) Marin Milotic et al.   BIOLOGICAL CONSERVATION

A global parasite conservation plan

(2020) Colin J. Carlson et al.   BIOLOGICAL CONSERVATION

Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions

(2020) Andrew D. Sweet et al.   Ecology and Evolution

Determinants of genetic variation across eco-evolutionary scales in pinnipeds

(2020) Claire R. Peart et al.   Nature Ecology & Evolution

“Parasite turnover zone” at secondary contact: A new pattern in host–parasite population genetics

(2020) Jana Martinů et al.   MOLECULAR ECOLOGY

Phylogenomics of parasitic and non-parasitic lice (Insecta: Psocodea): Combining sequence data and Exploring compositional bias solutions in Next Generation Datasets

(2020) Robert S de Moya et al.   SYSTEMATIC BIOLOGY

Mitogenomics of the endangered Mediterranean monk seal (Monachus monachus) reveals dramatic loss of diversity and supports historical gene-flow between Atlantic and eastern Mediterranean populations

(2020) Alba Rey-Iglesia et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Sealed in a lake — Biology and conservation of the endangered Saimaa ringed seal: A review

(2020) Mervi Kunnasranta et al.   BIOLOGICAL CONSERVATION

Strongly deleterious mutations are a primary determinant of extinction risk due to inbreeding depression

(2020) Christopher C. Kyriazis et al.   Evolution Letters

Tigers of the World: Genomics and Conservation

(2019) Shu-Jin Luo et al.   Annual Review of Animal Biosciences

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation

(2019) Alexandre Lemopoulos et al.   Ecology and Evolution

Phylogenomic analysis of seal lice reveals codivergence with their hosts

(2019) María Soledad Leonardi et al.   SYSTEMATIC ENTOMOLOGY

widgetcon : A website and program for quick conversion among common population genetic data formats

(2019) Mahmut Aydın et al.   Molecular Ecology Resources

Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes: examining controversial relationships via degeneracy coding and interrogation of gene conflict

(2019) Rachel K. Skinner et al.   SYSTEMATIC ENTOMOLOGY

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Host genetic diversity limits parasite success beyond agricultural systems: a meta-analysis

(2019) Alice K. E. Ekroth et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Optimal sequencing depth design for whole genome re-sequencing in pigs

(2019) Yifan Jiang et al.   BMC BIOINFORMATICS

Correction to: The population genetics of parasitic nematodes of wild animals

(2019) Rebecca Cole et al.   Parasites & Vectors

Beyond ecosystem services: Using charismatic megafauna as flagship species for mangrove forest conservation

(2019) Benjamin S. Thompson et al.   ENVIRONMENTAL SCIENCE & POLICY

Putting the genome in insect phylogenomics

(2019) Kevin P Johnson   Current Opinion in Insect Science

Gene flow and adaptive potential in a generalist ectoparasite

(2018) Anaïs S. C. Appelgren et al.   BMC EVOLUTIONARY BIOLOGY

Phoretic dispersal influences parasite population genetic structure

(2018) Emily DiBlasi et al.   MOLECULAR ECOLOGY

Quantifying Temporal Genomic Erosion in Endangered Species

(2018) David Díez-del-Molino et al.   TRENDS IN ECOLOGY & EVOLUTION

Parasites at Risk – Insights from an Endangered Marsupial

(2018) R.C. Andrew Thompson et al.   TRENDS IN PARASITOLOGY

The paradoxical extinction of the most charismatic animals

(2018) Franck Courchamp et al.   PLOS BIOLOGY

Are island-like systems biologically similar to islands? A review of the evidence

(2018) Yuval Itescu   ECOGRAPHY

The role of parasite dispersal in shaping a host-parasite system at multiple evolutionary scales

(2018) Andrew D. Sweet et al.   MOLECULAR ECOLOGY

G′ ST , Jost′s D , and F ST are similarly constrained by allele frequencies: a mathematical, simulation, and empirical study

(2018) Nicolas Alcala et al.   MOLECULAR ECOLOGY

Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history

(2018) M. A. Stoffel et al.   Nature Communications

Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution

(2017) Andrew D. Sweet et al.   EVOLUTION

Conservation Genetics of the Cheetah: Lessons Learned and New Opportunities

(2017) Stephen J O’Brien et al.   JOURNAL OF HEREDITY

Role of parasite transmission in promoting inbreeding: II. Pedigree reconstruction reveals sib-transmission and consequent kin-mating

(2017) Jillian T. Detwiler et al.   MOLECULAR ECOLOGY

Parasite biodiversity faces extinction and redistribution in a changing climate

(2017) Colin J. Carlson et al.   Science Advances

Host dispersal as the driver of parasite genetic structure: a paradigm lost?

(2016) Elise Mazé-Guilmo et al.   ECOLOGY LETTERS

Genomics advances the study of inbreeding depression in the wild

(2016) Marty Kardos et al.   Evolutionary Applications

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

For Host's Sake: The Pluses of Parasite Preservation

(2016) Hamish G. Spencer et al.   TRENDS IN ECOLOGY & EVOLUTION

Genetic co-structuring in host-parasite systems: Empirical data from raccoons and raccoon ticks

(2016) Guha Dharmarajan et al.   Ecosphere

Genetic Monitoring of a Critically-Endangered Seal Population Based on Field-Collected Placentas

(2015) Mia Valtonen et al.   ANNALES ZOOLOGICI FENNICI

aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data

(2015) Julie M Allen et al.   BMC BIOINFORMATICS

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

(2015) Siavash Mirarab et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

ASTRAL: genome-scale coalescent-based species tree estimation

(2014) S. Mirarab et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Birds are islands for parasites

(2014) J. A. H. Koop et al.   Biology Letters

LIFETIME INBREEDING DEPRESSION, PURGING, AND MATING SYSTEM EVOLUTION IN A SIMULTANEOUS HERMAPHRODITE TAPEWORM

(2014) Daniel P. Benesh et al.   EVOLUTION

Inbreeding within human Schistosoma mansoni: do host-specific factors shape the genetic composition of parasite populations?

(2014) F Van den Broeck et al.   HEREDITY

Ectoparasites in Black-footed Ferrets (Mustela nigripes) from the Largest Reintroduced Population of the Conata Basin, South Dakota, USA

(2014) Nyeema C. Harris et al.   JOURNAL OF WILDLIFE DISEASES

Co-extinct and critically co-endangered species of parasitic lice, and conservation-induced extinction: should lice be reintroduced to their hosts?

(2014) Lajos Rózsa et al.   ORYX

What helminth genomes have taught us about parasite evolution

(2014) MAGDALENA ZAROWIECKI et al.   PARASITOLOGY

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Demographic histories and genetic diversities of Fennoscandian marine and landlocked ringed seal subspecies

(2014) Tommi Nyman et al.   Ecology and Evolution

Causes and consequences of fine-scale population structure in a critically endangered freshwater seal

(2014) Mia Valtonen et al.   BMC ECOLOGY

The dilemma of conserving parasites: the case of Felicola (Lorisicola) isidoroi (Phthiraptera: Trichodectidae) and its host, the endangered Iberian lynx (Lynx pardinus)

(2013) Jesús M. Pérez et al.   Insect Conservation and Diversity

Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization

(2013) Luisa Orsini et al.   MOLECULAR ECOLOGY

Host traits explain the genetic structure of parasites: a meta-analysis

(2013) ISABEL BLASCO-COSTA et al.   PARASITOLOGY

Lousy mums: patterns of vertical transmission of an amphibious louse

(2013) M. S. Leonardi et al.   PARASITOLOGY RESEARCH

Combined Genetic and Telemetry Data Reveal High Rates of Gene Flow, Migration, and Long-Distance Dispersal Potential in Arctic Ringed Seals (Pusa hispida)

(2013) Micaela E. Martinez-Bakker et al.   PLoS One

Effects of genotypic and phenotypic variation on establishment are important for conservation, invasion, and infection biology

(2013) A. Forsman   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial and temporal variation in genetic diversity of an endangered freshwater seal

(2012) Mia Valtonen et al.   CONSERVATION GENETICS

The Relationship Between FST and the Frequency of the Most Frequent Allele

(2012) M. Jakobsson et al.   GENETICS

Next-generation phylogenomics using a Target Restricted Assembly Method

(2012) Kevin P. Johnson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Trapped in the extinction vortex? Strong genetic effects in a declining vertebrate population

(2010) Donald Blomqvist et al.   BMC EVOLUTIONARY BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

(2010) BERNHARD HAUBOLD et al.   MOLECULAR ECOLOGY

Assessing population structure: FST and related measures

(2010) PATRICK G. MEIRMANS et al.   Molecular Ecology Resources

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

The sixth mass coextinction: are most endangered species parasites and mutualists?

(2009) R. R. Dunn et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources