The role of parasite dispersal in shaping a host-parasite system at multiple evolutionary scales

Phoretic dispersal influences parasite population genetic structure

(2018) Emily DiBlasi et al.   MOLECULAR ECOLOGY

Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution

(2017) Andrew D. Sweet et al.   EVOLUTION

Cophylogenetic patterns are uncorrelated between two lineages of parasites on the same hosts

(2016) Andrew D. Sweet et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Temporal and spatial mosaics: deep host association and shallow geographic drivers shape genetic structure in a widespread pinworm,Rauschtineria eutamii(Nematoda: Oxyuridae)

(2016) Kayce C. Bell et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Walk or ride? Phoretic behaviour of amblyceran and ischnoceran lice

(2016) Andrew W. Bartlow et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

Limited dispersal in an ectoparasitic mite,Laelaps giganteus, contributes to significant phylogeographic congruence with the rodent host,Rhabdomys

(2016) Adriaan Engelbrecht et al.   MOLECULAR ECOLOGY

Cophylogenetic analysis of New World ground-doves (Aves: Columbidae) and their parasitic wing lice (Insecta: Phthiraptera: Columbicola )

(2016) Andrew D. Sweet et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Testing cospeciation through large-scale cophylogenetic studies

(2016) Astrid Cruaud et al.   Current Opinion in Insect Science

Patterns of diversification in small New World ground doves are consistent with major geologic events

(2015) Andrew D. Sweet et al.   AUK

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data

(2015) Julie M Allen et al.   BMC BIOINFORMATICS

Host population bottlenecks drive parasite extinction during antagonistic coevolution

(2015) Elze Hesse et al.   EVOLUTION

Birds are islands for parasites

(2014) J. A. H. Koop et al.   Biology Letters

Selecting optimal partitioning schemes for phylogenomic datasets

(2014) Robert Lanfear et al.   BMC EVOLUTIONARY BIOLOGY

The effect of host social system on parasite population genetic structure: comparative population genetics of two ectoparasitic mites and their bat hosts

(2014) Jaap van Schaik et al.   BMC EVOLUTIONARY BIOLOGY

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Host specificity shapes population structure of pinworm parasites in Caribbean reptiles

(2013) Bryan G. Falk et al.   MOLECULAR ECOLOGY

Biogeography and host-related factors trump parasite life history: limited congruence among the genetic structures of specific ectoparasitic lice and their rodent hosts

(2013) Nina du Toit et al.   MOLECULAR ECOLOGY

Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory

(2013) Asher D. Cutter   MOLECULAR PHYLOGENETICS AND EVOLUTION

Cospeciation vs host-shift speciation: methods for testing, evidence from natural associations and relation to coevolution

(2013) D. M. de Vienne et al.   NEW PHYTOLOGIST

Parasite co-structure: broad and local scale approaches

(2013) C.D. Criscione   Parasite

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Repeated adaptive divergence of microhabitat specialization in avian feather lice

(2012) Kevin P Johnson et al.   BMC BIOLOGY

Phylogenetic estimation error can decrease the accuracy of species delimitation: a Bayesian implementation of the general mixed Yule-coalescent model

(2012) Noah M Reid et al.   BMC EVOLUTIONARY BIOLOGY

Cophylogeny on a Fine Scale: Geomydoecus Chewing Lice and Their Pocket Gopher Hosts, Pappogeomys bulleri

(2012) James W. Demastes et al.   JOURNAL OF PARASITOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

There and back again: switching between host orders by avian body lice (Ischnocera: Goniodidae)

(2011) KEVIN P. JOHNSON et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A hitchhikers guide to the Galápagos: co-phylogeography of Galápagos mockingbirds and their parasites

(2011) Jan Štefka et al.   BMC EVOLUTIONARY BIOLOGY

Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

(2011) Stephen L Cameron et al.   BMC GENOMICS

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Community interactions govern host-switching with implications for host-parasite coevolutionary history

(2011) C. W. Harbison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host specificity in phylogenetic and geographic space

(2011) Robert Poulin et al.   TRENDS IN PARASITOLOGY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

(2010) Gaurav Vaidya et al.   CLADISTICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

mlRho - a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes

(2010) BERNHARD HAUBOLD et al.   MOLECULAR ECOLOGY

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

(2010) E. F. Kirkness et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Genetic population structures of the blue starfish Linckia laevigata and its gastropod ectoparasite Thyca crystallina

(2009) M Kochzius et al.   MARINE ECOLOGY PROGRESS SERIES

Coevolution between multiple helminth infestations and basal immune investment in mammals: cumulative effects of polyparasitism?

(2009) Frédéric Bordes et al.   PARASITOLOGY RESEARCH

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

COMPARATIVE TRANSMISSION DYNAMICS OF COMPETING PARASITE SPECIES

(2008) Christopher W. Harbison et al.   ECOLOGY

A hitchhiker’s guide to parasite transmission: The phoretic behaviour of feather lice

(2008) Christopher W. Harbison et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A macroevolutionary mosaic: episodic host-switching, geographical colonization and diversification in complex host-parasite systems

(2008) Eric P. Hoberg et al.   JOURNAL OF BIOGEOGRAPHY

The impact of parasite dispersal on antagonistic host-parasite coevolution

(2008) T. VOGWILL et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Geography and host biogeography matter for understanding the phylogeography of a parasite

(2008) C.M. Nieberding et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coexistence of multiple parasitoids on a single host due to differences in parasitoid phenology

(2008) E. Hackett-Jones et al.   Theoretical Ecology

Life history determines genetic structure and evolutionary potential of host–parasite interactions

(2008) Luke G. Barrett et al.   TRENDS IN ECOLOGY & EVOLUTION