Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation

Genetic population structure of the round whitefish (Prosopium cylindraceum) in North America: multiple markers reveal glacial refugia and regional subdivision

(2018) Thomas D. Morgan et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Developing reduced SNP assays from whole-genome sequence data to estimate introgression in an organism with complex genetic patterns, the Iberian honeybee (Apis mellifera iberiensis )

(2018) Dora Henriques et al.   Evolutionary Applications

Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery

(2018) Ian R. Bradbury et al.   Evolutionary Applications

Comparison of Migratory and Resident Populations of Brown Trout Reveals Candidate Genes for Migration Tendency

(2018) Alexandre Lemopoulos et al.   Genome Biology and Evolution

Association mapping reveals candidate loci for resistance and anaemic response to an emerging temperature-driven parasitic disease in a wild salmonid fish

(2018) F. Ahmad et al.   MOLECULAR ECOLOGY

Phylogenetic analysis of Antarctic notothenioids illuminates the utility of RADseq for resolving Cenozoic adaptive radiations

(2018) Thomas J. Near et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Invasion genomics: genotyping-by-sequencing approach reveals regional genetic structure and signatures of temporal selection in an introduced mud crab

(2017) Tiia Forsström et al.   MARINE BIOLOGY

Sex matters in massive parallel sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems

(2017) Laura Benestan et al.   MOLECULAR ECOLOGY

Purging putative siblings from population genetic data sets: a cautionary view

(2017) Robin S. Waples et al.   MOLECULAR ECOLOGY

Microhaplotypes provide increased power from short-read DNA sequences for relationship inference

(2017) Diana S. Baetscher et al.   Molecular Ecology Resources

A Dense Brown Trout ( Salmo trutta ) Linkage Map Reveals Recent Chromosomal Rearrangements in the Salmo Genus and the Impact of Selection on Linked Neutral Diversity

(2017) Maeva Leitwein et al.   G3-Genes Genomes Genetics

Genome-wide divergence patterns support fine-scaled genetic structuring associated with migration tendency in brown trout

(2017) Alexandre Lemopoulos et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Comparing estimates of number of breedersNbbased on microsatellites and single nucleotide polymorphism of three groups of brown trout (Salmo truttaL.)

(2016) A. N. Linløkken et al.   FISHERIES MANAGEMENT AND ECOLOGY

Improved confidence intervals for the linkage disequilibrium method for estimating effective population size

(2016) A T Jones et al.   HEREDITY

Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci

(2016) R K Waples et al.   HEREDITY

Spatio-temporal genetic structure and the effects of long-term fishing in two partially sympatric offshore demersal fishes

(2016) Romina Henriques et al.   MOLECULAR ECOLOGY

Genomewide introgressive hybridization patterns in wild Atlantic salmon influenced by inadvertent gene flow from hatchery releases

(2016) M. Y. Ozerov et al.   MOLECULAR ECOLOGY

Comparing RADseq and microsatellites to infer complex phylogeographic patterns, an empirical perspective in the Crucian carp,Carassius carassius,L.

(2016) Daniel L. Jeffries et al.   MOLECULAR ECOLOGY

SNPs selected by information content outperform randomly selected microsatellite loci for delineating genetic identification and introgression in the endangered dark European honeybee (Apis mellifera mellifera )

(2016) Irene Muñoz et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

inbreedR: anRpackage for the analysis of inbreeding based on genetic markers

(2016) Martin A. Stoffel et al.   Methods in Ecology and Evolution

Strategies for determining kinship in wild populations using genetic data

(2016) Veronika Städele et al.   Ecology and Evolution

Human mining activity across the ages determines the genetic structure of modern brown trout (Salmo truttaL.) populations

(2015) Josephine R. Paris et al.   Evolutionary Applications

Quantifying heritable variation in fitness-related traits of wild, farmed and hybrid Atlantic salmon families in a wild river environment

(2015) T E Reed et al.   HEREDITY

Heterozygosity-fitness correlations in a declining seabird population

(2015) Alberto Velando et al.   MOLECULAR ECOLOGY

Transatlantic secondary contact in Atlantic Salmon, comparing microsatellites, a single nucleotide polymorphism array and restriction-site associated DNA sequencing for the resolution of complex spatial structure

(2015) Ian R. Bradbury et al.   MOLECULAR ECOLOGY

Individual identification from genetic marker data: developments and accuracy comparisons of methods

(2015) Jinliang Wang   Molecular Ecology Resources

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Wild Estonian and Russian sea trout (Salmo trutta) in Finnish coastal sea trout catches: results of genetic mixed-stock analysis

(2015) Marja-Liisa Koljonen et al.   HEREDITAS

Identifying correlates of success and failure of native freshwater fish reintroductions

(2014) Jennifer L. Cochran-Biederman et al.   CONSERVATION BIOLOGY

Genetic structure of brown trout,Salmo trutta, populations from differently sized tributaries of Lake Mjøsa in south-east Norway

(2014) A. N. Linløkken et al.   FISHERIES MANAGEMENT AND ECOLOGY

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating genome-wide heterozygosity: effects of demographic history and marker type

(2013) J M Miller et al.   HEREDITY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Reproductive success of captively bred and naturally spawned Chinook salmon colonizing newly accessible habitat

(2012) Joseph H. Anderson et al.   Evolutionary Applications

Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

(2012) Matthieu Bruneaux et al.   MOLECULAR ECOLOGY

Fine-scale local adaptation in an invasive freshwater fish has evolved in contemporary time

(2012) P. A. H. Westley et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Genetic effects of supportive stockings on native pikeperch populations in boreal lakes - three cases, three different outcomes

(2011) Matti Salminen et al.   HEREDITAS

An empirical comparison of SNPs and microsatellites for parentage and kinship assignment in a wild sockeye salmon (Oncorhynchus nerka) population

(2011) LORENZ HAUSER et al.   Molecular Ecology Resources

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

(2011) PAUL A. HOHENLOHE et al.   Molecular Ecology Resources

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Polymorphic Atlantic salmon, Salmo salar L., microsatellites at the SSOSL438, SSOSL439 and SSOSL444 loci

(2010) A. Slettan et al.   ANIMAL GENETICS

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

High level of population genetic structuring in lake-run brown trout, Salmo trutta, of the Inari Basin, northern Finland

(2010) A. Swatdipong et al.   JOURNAL OF FISH BIOLOGY

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

A quantitative review of heterozygosity-fitness correlations in animal populations

(2009) J. R. CHAPMAN et al.   MOLECULAR ECOLOGY

Molecular road ecology: exploring the potential of genetics for investigating transportation impacts on wildlife

(2009) NIKO BALKENHOL et al.   MOLECULAR ECOLOGY

COLONY: a program for parentage and sibship inference from multilocus genotype data

(2009) OWEN R. JONES et al.   Molecular Ecology Resources

Human-induced evolution caused by unnatural selection through harvest of wild animals

(2009) F. W. Allendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Assessing the long-term genetic impact of historical stocking events on contemporary populations of Atlantic salmon,Salmo salar

(2008) A. K. FINNEGAN et al.   FISHERIES MANAGEMENT AND ECOLOGY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

To what extent do microsatellite markers reflect genome-wide genetic diversity in natural populations?

(2008) ÜLO VÄLI et al.   MOLECULAR ECOLOGY

Local adaptation in brown trout early life-history traits: implications for climate change adaptability

(2008) L. F. Jensen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES