Stability and context of intercalated motifs (i-motifs) for biological applications
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Stability and context of intercalated motifs (i-motifs) for biological applications
Authors
Keywords
-
Journal
BIOCHIMIE
Volume 198, Issue -, Pages 33-47
Publisher
Elsevier BV
Online
2022-03-07
DOI
10.1016/j.biochi.2022.03.001
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Mechanistic Insights into the Ligand-Induced Unfolding of an RNA G-Quadruplex
- (2022) Susanta Haldar et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The i-Motif as a Molecular Target: More than a Complementary DNA Secondary Structure
- (2021) Susie L. Brown et al. Pharmaceuticals
- Facile Construction of i-Motif DNA-Conjugated Gold Nanostars as Near-Infrared and pH Dual-Responsive Targeted Drug Delivery Systems for Combined Cancer Therapy
- (2020) Dandan Miao et al. MOLECULAR PHARMACEUTICS
- I-Motif/miniduplex hybrid structures bind benzothiazole dyes with unprecedented efficiencies: a generic light-up system for label-free DNA nanoassemblies and bioimaging
- (2020) Lili Shi et al. NUCLEIC ACIDS RESEARCH
- Characterization of interaction between Bcl-2 oncogene promoter I-Motif DNA and flavonoids using electrospray ionization mass spectrometry and pressure-assisted capillary electrophoresis frontal analysis
- (2020) Yang Yang et al. TALANTA
- In vivo visualization of the i-motif DNA secondary structure in the Bombyx mori testis
- (2020) Wenhuan Tang et al. Epigenetics & Chromatin
- Preferential targeting cancer-related i-motif DNAs by the plant flavonol fisetin for theranostics applications
- (2020) Shuntaro Takahashi et al. Scientific Reports
- Biotechnological and Therapeutic Applications of Natural Nucleic Acid Structural Motifs
- (2020) Jinwei Duan et al. Topics in Current Chemistry
- Tricky Topology: Persistence of Folded Human Telomeric i-Motif DNA at Ambient Temperature and Neutral pH
- (2020) Mahmoud A. S. Abdelhamid et al. Frontiers in Chemistry
- Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA
- (2020) Petra Školáková et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Potential applications of folded and unfolded DNA nanocarriers in medicine
- (2020) Pravin Shende et al. JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY
- Beyond Solvent Exclusion: i-Motif Detecting Capability and an Alternative DNA Light-Switching Mechanism in a Ruthenium(II) Polypyridyl Complex
- (2020) Philip Spence et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Advances in oligonucleotide drug delivery
- (2020) Thomas C. Roberts et al. NATURE REVIEWS DRUG DISCOVERY
- Insulin and Metformin Control Cell Proliferation by Regulating TDG-Mediated DNA Demethylation in Liver and Breast Cancer Cells
- (2020) Jia-Bao Yan et al. Molecular Therapy-Oncolytics
- DNA G-Quadruplex and i-Motif Structure Formation Is Interdependent in Human Cells
- (2020) Jessica J. King et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Chemical Regulation of DNA i-Motifs for Nanobiotechnology and Therapeutics
- (2019) Jyotirmayee Dash et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Systematic investigation of sequence requirements for DNA i-motif formation
- (2019) Petra Školáková et al. NUCLEIC ACIDS RESEARCH
- Co-Localization of DNA i-Motif-Forming Sequences and 5-Hydroxymethyl-cytosines in Human Embryonic Stem Cells
- (2019) Yogini P. Bhavsar-Jog et al. MOLECULES
- Epigenetic modification of cytosines fine tunes the stability of i-motif DNA
- (2019) Elisé P Wright et al. NUCLEIC ACIDS RESEARCH
- Stabilization of Long-Looped i-Motif DNA by Polypyridyl Ruthenium Complexes
- (2019) Benjamin J. Pages et al. Frontiers in Chemistry
- The frequency of CpG and non-CpG methylation of Notch3 gene promoter determines its expression levels in breast cancer cells
- (2019) Wenjun Xiao et al. EXPERIMENTAL CELL RESEARCH
- 5-Carboxylcytosine and Cytosine Protonation Distinctly Alter the Stability and Dehybridization Dynamics of the DNA Duplex
- (2019) Brennan Ashwood et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells
- (2018) Simon Dzatko et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- I-motif DNA structures are formed in the nuclei of human cells
- (2018) Mahdi Zeraati et al. Nature Chemistry
- Redox-dependent control of i-Motif DNA structure using copper cations
- (2018) Mahmoud AS Abdelhamid et al. NUCLEIC ACIDS RESEARCH
- Unraveling the 4n − 1 rule for DNA i-motif stability: base pairs vs. loop lengths
- (2018) Aaron M. Fleming et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- DNA G-quadruplex structures mold the DNA methylome
- (2018) Shi-Qing Mao et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- i-Motif DNA: structural features and significance to cell biology
- (2018) Hala Abou Assi et al. NUCLEIC ACIDS RESEARCH
- Common G-Quadruplex Binding Agents Found to Interact With i-Motif-Forming DNA: Unexpected Multi-Target-Directed Compounds
- (2018) Alessia Pagano et al. Frontiers in Chemistry
- Destabilization of i-Motif DNA at Neutral pH by G-Quadruplex Ligands
- (2018) Mahmoud A. S. Abdelhamid et al. BIOCHEMISTRY
- G-Quadruplex and I-Motif Structures within the Telomeric DNA Duplex. A Molecular Dynamics Analysis of Protonation States as Factors Affecting Their Stability
- (2018) Pawel Wolski et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Simultaneous Drug Targeting of the Promoter MYC G-Quadruplex and BCL2 i-Motif in Diffuse Large B-Cell Lymphoma Delays Tumor Growth
- (2017) Samantha Kendrick et al. JOURNAL OF MEDICINAL CHEMISTRY
- 4n–1 Is a “Sweet Spot” in DNA i-Motif Folding of 2′-Deoxycytidine Homopolymers
- (2017) Aaron M. Fleming et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The Consequences of Overlapping G-Quadruplexes and i-Motifs in the Platelet-Derived Growth Factor Receptor β Core Promoter Nuclease Hypersensitive Element Can Explain the Unexpected Effects of Mutations and Provide Opportunities for Selective Targeting of Both Structures by Small Molecules To Downregulate Gene Expression
- (2017) Robert V. Brown et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Insight into the Complexity of the i-Motif and G-Quadruplex DNA Structures Formed in the KRAS Promoter and Subsequent Drug-Induced Gene Repression
- (2017) Christine E. Kaiser et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- BmILF and i-motif structure are involved in transcriptional regulation of BmPOUM2 in Bombyx mori
- (2017) Kangkang Niu et al. NUCLEIC ACIDS RESEARCH
- Identification of multiple genomic DNA sequences which form i-motif structures at neutral pH
- (2017) Elisé P. Wright et al. NUCLEIC ACIDS RESEARCH
- Identification of new DNA i-motif binding ligands through a fluorescent intercalator displacement assay
- (2017) Qiran Sheng et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Machine learning model for sequence-driven DNA G-quadruplex formation
- (2017) Aleksandr B. Sahakyan et al. Scientific Reports
- Mutually Exclusive Formation of G-Quadruplex and i-Motif Is a General Phenomenon Governed by Steric Hindrance in Duplex DNA
- (2016) Yunxi Cui et al. BIOCHEMISTRY
- Thermodynamic linkage analysis of pH-induced folding and unfolding transitions of i-motifs
- (2016) Byul G. Kim et al. BIOPHYSICAL CHEMISTRY
- A Mechanosensor Mechanism Controls the G-Quadruplex/i-Motif Molecular Switch in the MYC Promoter NHE III1
- (2016) Caleb Sutherland et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Stabilization of i-motif structures by 2′-β-fluorination of DNA
- (2016) Hala Abou Assi et al. NUCLEIC ACIDS RESEARCH
- Re-evaluation of G-quadruplex propensity with G4Hunter
- (2016) Amina Bedrat et al. NUCLEIC ACIDS RESEARCH
- Mitoxantrone and Analogues Bind and Stabilize i-Motif Forming DNA Sequences
- (2016) Elisé P. Wright et al. Scientific Reports
- Weakened N3 Hydrogen Bonding by 5-Formylcytosine and 5-Carboxylcytosine Reduces Their Base-Pairing Stability
- (2015) Qing Dai et al. ACS Chemical Biology
- Effect of Interior Loop Length on the Thermal Stability and pKa of i-Motif DNA
- (2015) Samantha M. Reilly et al. BIOCHEMISTRY
- Reversible DNA i-motif to hairpin switching induced by copper(ii) cations
- (2015) Henry Albert Day et al. CHEMICAL COMMUNICATIONS
- The importance of loop length on the stability of i-motif structures
- (2015) Sarah P. Gurung et al. CHEMICAL COMMUNICATIONS
- Centromeric Alpha-Satellite DNA Adopts Dimeric i-Motif Structures Capped by AT Hoogsteen Base Pairs
- (2015) Miguel Garavís et al. CHEMISTRY-A EUROPEAN JOURNAL
- High-throughput sequencing of DNA G-quadruplex structures in the human genome
- (2015) Vicki S Chambers et al. NATURE BIOTECHNOLOGY
- 5-Formylcytosine can be a stable DNA modification in mammals
- (2015) Martin Bachman et al. Nature Chemical Biology
- Regulation of telomeric i-motif stability by 5-methylcytosine and 5-hydroxymethylcytosine modification
- (2015) Baochang Xu et al. ORGANIC & BIOMOLECULAR CHEMISTRY
- Modulation of the stability of i-motif structures using an acyclic threoninol cytidine derivative
- (2015) Sonia Pérez-Rentero et al. RSC Advances
- GC-elements controlling HRAS transcription form i-motif structures unfolded by heterogeneous ribonucleoprotein particle A1
- (2015) Giulia Miglietta et al. Scientific Reports
- Epigenetic Modification, Dehydration, and Molecular Crowding Effects on the Thermodynamics of i-Motif Structure Formation from C-Rich DNA
- (2014) Yogini P. Bhavsar-Jog et al. BIOCHEMISTRY
- i-Motif DNA: Structure, stability and targeting with ligands
- (2014) Henry A. Day et al. BIOORGANIC & MEDICINAL CHEMISTRY
- From development to diseases: The role of 5hmC in brain
- (2014) Wenjia Sun et al. GENOMICS
- Destabilization of i-Motif by Submolar Concentrations of a Monovalent Cation
- (2014) Sung Eun Kim et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The Dynamic Character of the BCL2 Promoter i-Motif Provides a Mechanism for Modulation of Gene Expression by Compounds That Bind Selectively to the Alternative DNA Hairpin Structure
- (2014) Samantha Kendrick et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The Transcriptional Complex Between the BCL2 i-Motif and hnRNP LL Is a Molecular Switch for Control of Gene Expression That Can Be Modulated by Small Molecules
- (2014) Hyun-Jin Kang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Quantification of Topological Coupling between DNA Superhelicity and G-quadruplex Formation
- (2014) Sangeetha Selvam et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- 5-Formylcytosine alters the structure of the DNA double helix
- (2014) Eun-Ang Raiber et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- G-Quadruplex Structures and CpG Methylation Cause Drop-Out of the Maternal Allele in Polymerase Chain Reaction Amplification of the Imprinted MEST Gene Promoter
- (2014) Aaron J. Stevens et al. PLoS One
- Fundamental aspects of the nucleic acid i-motif structures
- (2014) S. Benabou et al. RSC Advances
- Silver cations fold i-motif at neutral pH
- (2013) Henry A. Day et al. CHEMICAL COMMUNICATIONS
- Quantitative visualization of DNA G-quadruplex structures in human cells
- (2013) Giulia Biffi et al. Nature Chemistry
- Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain
- (2013) Junjie U Guo et al. NATURE NEUROSCIENCE
- A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation
- (2013) Mario Iurlaro et al. GENOME BIOLOGY
- Reversible Plasmonic Probe Sensitive for pH in Micro/Nanospaces Based on i-Motif-Modulated Morpholino-Gold Nanoparticle Assembly
- (2012) Yun Zhao et al. ANALYTICAL CHEMISTRY
- Stabilization of G-quadruplex DNA by C-5-methyl-cytosine in bcl-2 promoter: Implications for epigenetic regulation
- (2012) Jing Lin et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- G-Quadruplex and i-Motif Are Mutually Exclusive in ILPR Double-Stranded DNA
- (2012) Soma Dhakal et al. BIOPHYSICAL JOURNAL
- I-Motif formation in gene promoters: unusually stable formation in sequences complementary to known G-quadruplexes
- (2012) John A. Brazier et al. CHEMICAL COMMUNICATIONS
- Ruthenium(ii) polypyridyl complexes and DNA—from structural probes to cellular imaging and therapeutics
- (2012) Martin R. Gill et al. CHEMICAL SOCIETY REVIEWS
- NMR spectroscopy of G-quadruplexes
- (2012) Michael Adrian et al. METHODS
- The Role of Methylation in the Intrinsic Dynamics of B- and Z-DNA
- (2012) Nuri A. Temiz et al. PLoS One
- Germline DNA Demethylation Dynamics and Imprint Erasure Through 5-Hydroxymethylcytosine
- (2012) J. A. Hackett et al. SCIENCE
- Insights into the biomedical effects of carboxylated single-wall carbon nanotubes on telomerase and telomeres
- (2012) Yong Chen et al. Nature Communications
- Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning
- (2011) Anna Lena Lieblein et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- Tet1 and Tet2 Regulate 5-Hydroxymethylcytosine Production and Cell Lineage Specification in Mouse Embryonic Stem Cells
- (2011) Kian Peng Koh et al. Cell Stem Cell
- 5-Hydroxymethylcytosine: a new kid on the epigenetic block?
- (2011) F. Matarese et al. Molecular Systems Biology
- Tet-Mediated Formation of 5-Carboxylcytosine and Its Excision by TDG in Mammalian DNA
- (2011) Y.-F. He et al. SCIENCE
- Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine
- (2011) S. Ito et al. SCIENCE
- An autonomous DNA nanomachine maps spatiotemporal pH changes in a multicellular living organism
- (2011) Sunaina Surana et al. Nature Communications
- Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH
- (2010) Arivazhagan Rajendran et al. CHEMICAL COMMUNICATIONS
- Making sense of G-quadruplex and i-motif functions in oncogene promoters
- (2010) Tracy A. Brooks et al. FEBS Journal
- Effect of Modulation of hnRNP L Levels on the Decay of bcl-2 mRNA in MCF-7 Cells
- (2010) Mi-Hyun Lim et al. KOREAN JOURNAL OF PHYSIOLOGY & PHARMACOLOGY
- I-Motif Structures Formed in the Human c-MYC Promoter Are Highly Dynamic–Insights into Sequence Redundancy and I-Motif Stability
- (2010) Jixun Dai et al. PLoS One
- The Importance of Negative Superhelicity in Inducing the Formation of G-Quadruplex and i-Motif Structures in the c-Myc Promoter: Implications for Drug Targeting and Control of Gene Expression
- (2009) Daekyu Sun et al. JOURNAL OF MEDICINAL CHEMISTRY
- The i-Motif in thebcl-2P1 Promoter Forms an Unexpectedly Stable Structure with a Unique 8:5:7 Loop Folding Pattern
- (2009) Samantha Kendrick et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Formation of i-motif structure at neutral and slightly alkaline pH
- (2009) Jun Zhou et al. Molecular BioSystems
- A DNA nanomachine that maps spatial and temporal pH changes inside living cells
- (2009) Souvik Modi et al. Nature Nanotechnology
- Role of platelet-derived growth factors in physiology and medicine
- (2008) J. Andrae et al. GENES & DEVELOPMENT
- Genome-Wide Computational and Expression Analyses Reveal G-Quadruplex DNA Motifs as Conservedcis-Regulatory Elements in Human and Related Species
- (2008) Anjali Verma et al. JOURNAL OF MEDICINAL CHEMISTRY
- Intramolecularly folded G-quadruplex and i-motif structures in the proximal promoter of the vascular endothelial growth factor gene
- (2008) K. Guo et al. NUCLEIC ACIDS RESEARCH
- Structural polymorphism within a regulatory element of the human KRAS promoter: formation of G4-DNA recognized by nuclear proteins
- (2008) Susanna Cogoi et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now