Machine learning model for sequence-driven DNA G-quadruplex formation

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

G-quadruplex structures mark human regulatory chromatin

(2016) Robert Hänsel-Hertsch et al.   NATURE GENETICS

Re-evaluation of G-quadruplex propensity with G4Hunter

(2016) Amina Bedrat et al.   NUCLEIC ACIDS RESEARCH

Machine Learning in Genomic Medicine: A Review of Computational Problems and Data Sets

(2016) Michael K. K. Leung et al.   PROCEEDINGS OF THE IEEE

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

High-throughput sequencing of DNA G-quadruplex structures in the human genome

(2015) Vicki S Chambers et al.   NATURE BIOTECHNOLOGY

Machine learning applications in genetics and genomics

(2015) Maxwell W. Libbrecht et al.   NATURE REVIEWS GENETICS

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study

(2015) K. W. Lim et al.   NUCLEIC ACIDS RESEARCH

Guanine-vacancy–bearing G-quadruplexes responsive to guanine derivatives

(2015) Xin-min Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences

(2014) Masato Yano et al.   BMC GENOMICS

The Major G-Quadruplex Formed in the Human BCL-2 Proximal Promoter Adopts a Parallel Structure with a 13-nt Loop in K+ Solution

(2014) Prashansa Agrawal et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Predicting the human epigenome from DNA motifs

(2014) John W Whitaker et al.   NATURE METHODS

The folding of 5'-UTR human G-quadruplexes possessing a long central loop

(2014) R. Jodoin et al.   RNA

The human splicing code reveals new insights into the genetic determinants of disease

(2014) H. Y. Xiong et al.   SCIENCE

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction

(2013) Ronny Lorenz et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences

(2013) Vineeth Thachappilly Mukundan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Quantitative visualization of DNA G-quadruplex structures in human cells

(2013) Giulia Biffi et al.   Nature Chemistry

The G4 Genome

(2013) Nancy Maizels et al.   PLoS Genetics

Gradient boosting machines, a tutorial

(2013) Alexey Natekin et al.   Frontiers in Neurorobotics

Stabilization of G-quadruplex DNA by C-5-methyl-cytosine in bcl-2 promoter: Implications for epigenetic regulation

(2012) Jing Lin et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

NMR spectroscopy of G-quadruplexes

(2012) Michael Adrian et al.   METHODS

DNA secondary structures: stability and function of G-quadruplex structures

(2012) Matthew L. Bochman et al.   NATURE REVIEWS GENETICS

How long is too long? Effects of loop size on G-quadruplex stability

(2010) Aurore Guédin et al.   NUCLEIC ACIDS RESEARCH

A non-empirical chromophoric interpretation of CD spectra of DNA G-quadruplex structures

(2010) Stefano Masiero et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Predicting and understanding the stability of G-quadruplexes

(2009) Oliver Stegle et al.   BIOINFORMATICS

Effect of flanking bases on quadruplex stability and Watson-Crick duplex competition

(2009) Amit Arora et al.   FEBS Journal

Genomic Stability: FANCJ-Dependent G4 DNA Repair

(2008) Nancy Maizels   CURRENT BIOLOGY