Template-Based Assembly of Proteomic Short Reads For De Novo Antibody Sequencing and Repertoire Profiling

Pasa: Proteomic analysis of serum antibodies web server

(2021) Oren Avram et al.   PLoS Computational Biology

De Novo Sequencing of Antibody Light Chain Proteoforms from Patients with Multiple Myeloma

(2021) Mathieu Dupré et al.   ANALYTICAL CHEMISTRY

Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme

(2021) Weiwei Peng et al.   JOURNAL OF PROTEOME RESEARCH

Human plasma IgG1 repertoires are simple, unique, and dynamic

(2021) Albert Bondt et al.   Cell Systems

Differentiation of leucine and isoleucine residues in peptides using charge transfer dissociation mass spectrometry (CTD‐MS)

(2021) Halle M. Edwards et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Antimalarial antibody repertoire defined by plasma IG proteomics and single B cell IG sequencing

(2020) Camila H. Coelho et al.   JCI Insight

Persistent Antibody Clonotypes Dominate the Serum Response to Influenza over Multiple Years and Repeated Vaccinations

(2019) Jiwon Lee et al.   Cell Host & Microbe

SpotLight Proteomics—A IgG-Enrichment Phenotype Profiling Approach with Clinical Implications

(2019) Susanna L. Lundström et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination

(2019) Lisa C. Lindesmith et al.   IMMUNITY

Proteomics Pipeline for Identifying Variant Proteins in Plasmodium falciparum Parasites Isolated from Children Presenting with Malaria

(2019) Patricia A. Gonzales Hurtado et al.   JOURNAL OF PROTEOME RESEARCH

When monoclonal antibodies are not monospecific: Hybridomas frequently express additional functional variable regions

(2018) Andrew R. M. Bradbury et al.   mAbs

Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery

(2017) K. Ilker Sen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

An EThcD-Based Method for Discrimination of Leucine and Isoleucine Residues in Tryptic Peptides

(2017) Sergey S. Zhokhov et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Database-independent Protein Sequencing (DiPS) Enables Full-lengthde NovoProtein and Antibody Sequence Determination

(2017) Alon Savidor et al.   MOLECULAR & CELLULAR PROTEOMICS

De novo peptide sequencing by deep learning

(2017) Ngoc Hieu Tran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Individual and Population Genetics of Antibody Immunity

(2017) Corey T. Watson et al.   TRENDS IN IMMUNOLOGY

Proteomic Analysis of Pemphigus Autoantibodies Indicates a Larger, More Diverse, and More Dynamic Repertoire than Determined by B Cell Genetics

(2017) Jing Chen et al.   Cell Reports

SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics

(2017) Susanna L. Lundström et al.   Scientific Reports

Distinguishing between Leucine and Isoleucine by Integrated LC–MS Analysis Using an Orbitrap Fusion Mass Spectrometer

(2016) Yongsheng Xiao et al.   ANALYTICAL CHEMISTRY

De Novo MS/MS Sequencing of Native Human Antibodies

(2016) Adrian Guthals et al.   JOURNAL OF PROTEOME RESEARCH

Combining phage display with de novo protein sequencing for reverse engineering of monoclonal antibodies

(2016) Keith W. Rickert et al.   mAbs

Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination

(2016) Jiwon Lee et al.   NATURE MEDICINE

Complete De Novo Assembly of Monoclonal Antibody Sequences

(2016) Ngoc Hieu Tran et al.   Scientific Reports

Next-generation sequencing and protein mass spectrometry for the comprehensive analysis of human cellular and serum antibody repertoires

(2015) Jason J Lavinder et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Proteomic Identification of Monoclonal Antibodies from Serum

(2014) Daniel R. Boutz et al.   ANALYTICAL CHEMISTRY

The promise and challenge of high-throughput sequencing of the antibody repertoire

(2014) George Georgiou et al.   NATURE BIOTECHNOLOGY

A robust pipeline for rapid production of versatile nanobody repertoires

(2014) Peter C Fridy et al.   NATURE METHODS

A proteomics approach for the identification and cloning of monoclonal antibodies from serum

(2012) Wan Cheung Cheung et al.   NATURE BIOTECHNOLOGY

Primary sequence determination of a monoclonal antibody against α-synuclein using a novel mass spectrometry-based approach

(2011) Eric Sousa et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Sequencing antibody repertoires

(2011) Nicolas Fischer   mAbs

A new synthesis for antibody-mediated immunity

(2011) Arturo Casadevall et al.   NATURE IMMUNOLOGY

Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody

(2010) Natalie E. Castellana et al.   PROTEOMICS

Definition of human autoimmunity — autoantibodies versus autoimmune disease

(2009) Ana Lleo et al.   AUTOIMMUNITY REVIEWS

Automated de novo protein sequencing of monoclonal antibodies

(2008) Nuno Bandeira et al.   NATURE BIOTECHNOLOGY