Mass Spectrometry-Based De Novo Sequencing of Monoclonal Antibodies Using Multiple Proteases and a Dual Fragmentation Scheme

Persistent Antibody Clonotypes Dominate the Serum Response to Influenza over Multiple Years and Repeated Vaccinations

(2019) Jiwon Lee et al.   Cell Host & Microbe

Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination

(2019) Lisa C. Lindesmith et al.   IMMUNITY

The ABCD database: a repository for chemically defined antibodies

(2019) Wanessa C Lima et al.   NUCLEIC ACIDS RESEARCH

The Increasingly Human and Profitable Monoclonal Antibody Market

(2018) António L. Grilo et al.   TRENDS IN BIOTECHNOLOGY

Automated Antibody De Novo Sequencing and Its Utility in Biopharmaceutical Discovery

(2017) K. Ilker Sen et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Database-independent Protein Sequencing (DiPS) Enables Full-lengthde NovoProtein and Antibody Sequence Determination

(2017) Alon Savidor et al.   MOLECULAR & CELLULAR PROTEOMICS

Next generation antibody drugs: pursuit of the 'high-hanging fruit'

(2017) Paul J. Carter et al.   NATURE REVIEWS DRUG DISCOVERY

The Individual and Population Genetics of Antibody Immunity

(2017) Corey T. Watson et al.   TRENDS IN IMMUNOLOGY

Proteomic Analysis of Pemphigus Autoantibodies Indicates a Larger, More Diverse, and More Dynamic Repertoire than Determined by B Cell Genetics

(2017) Jing Chen et al.   Cell Reports

De novo design of antibody complementarity determining regions binding a FLAG tetra-peptide

(2017) Kevin C. Entzminger et al.   Scientific Reports

De Novo MS/MS Sequencing of Native Human Antibodies

(2016) Adrian Guthals et al.   JOURNAL OF PROTEOME RESEARCH

Combining phage display with de novo protein sequencing for reverse engineering of monoclonal antibodies

(2016) Keith W. Rickert et al.   mAbs

Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination

(2016) Jiwon Lee et al.   NATURE MEDICINE

A proposal for validation of antibodies

(2016) Mathias Uhlen et al.   NATURE METHODS

IVA cloning: A single-tube universal cloning system exploiting bacterial In Vivo Assembly

(2016) Javier García-Nafría et al.   Scientific Reports

Complete De Novo Assembly of Monoclonal Antibody Sequences

(2016) Ngoc Hieu Tran et al.   Scientific Reports

Reproducibility crisis: Blame it on the antibodies

(2015) Monya Baker   NATURE

Proteomic Identification of Monoclonal Antibodies from Serum

(2014) Daniel R. Boutz et al.   ANALYTICAL CHEMISTRY

The promise and challenge of high-throughput sequencing of the antibody repertoire

(2014) George Georgiou et al.   NATURE BIOTECHNOLOGY

Sequencing the functional antibody repertoire—diagnostic and therapeutic discovery

(2014) William H. Robinson   Nature Reviews Rheumatology

Unambiguous Phosphosite Localization using Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)

(2013) Christian K. Frese et al.   JOURNAL OF PROTEOME RESEARCH

Energy Dependence of HCD on Peptide Fragmentation: Stepped Collisional Energy Finds the Sweet Spot

(2013) Jolene K. Diedrich et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry

(2012) Christian K. Frese et al.   ANALYTICAL CHEMISTRY

A proteomics approach for the identification and cloning of monoclonal antibodies from serum

(2012) Wan Cheung Cheung et al.   NATURE BIOTECHNOLOGY

Primary sequence determination of a monoclonal antibody against α-synuclein using a novel mass spectrometry-based approach

(2011) Eric Sousa et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Sequencing antibody repertoires

(2011) Nicolas Fischer   mAbs

Resurrection of a clinical antibody: Template proteogenomic de novo proteomic sequencing and reverse engineering of an anti-lymphotoxin-α antibody

(2010) Natalie E. Castellana et al.   PROTEOMICS

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF

(2009) François Ehrenmann et al.   NUCLEIC ACIDS RESEARCH

Automated de novo protein sequencing of monoclonal antibodies

(2008) Nuno Bandeira et al.   NATURE BIOTECHNOLOGY