Sucrose addition directionally enhances bacterial community convergence and network stability of the shrimp culture system

Environmental stress destabilizes microbial networks

(2021) Damian J. Hernandez et al.   ISME Journal

Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing

(2021) Briana R. Flaherty et al.   Microbiome

Climate warming enhances microbial network complexity and stability

(2021) Mengting Maggie Yuan et al.   Nature Climate Change

Management of biofloc concentrations as an ecological strategy for microbial control in intensive shrimp culture

(2021) Fabrini Copetti et al.   AQUACULTURE

A plant genetic network for preventing dysbiosis in the phyllosphere

(2020) Tao Chen et al.   NATURE

Effects of Carbon/Nitrogen Ratio on Growth, Intestinal Microbiota and Metabolome of Shrimp (Litopenaeus vannamei)

(2020) Haipeng Guo et al.   Frontiers in Microbiology

Microecological Koch’s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome

(2020) Zhijian Huang et al.   Microbiome

The bacteria from large-sized bioflocs are more associated with the shrimp gut microbiota in culture system

(2020) Lei Huang et al.   AQUACULTURE

Gut microbiome stability and resilience: elucidating the response to perturbations in order to modulate gut health

(2020) Marina Fassarella et al.   GUT

Healthy microbiome: a key to successful and sustainable shrimp aquaculture

(2020) Riya Rajeev et al.   Reviews in Aquaculture

Dissimilarity of microbial diversity of pond water, shrimp intestine and sediment in Aquamimicry system

(2020) Shenzheng Zeng et al.   AMB Express

Prokaryotic communities vary with floc size in a biofloc-technology based aquaculture system

(2020) Guangshan Wei et al.   AQUACULTURE

Supplemental carbon sources applied in biofloc technology aquaculture systems: types, effects and future research

(2020) Godwin Abakari et al.   Reviews in Aquaculture

Gastrointestinal microbiota imbalance is triggered by the enrichment of Vibrio in subadult Litopenaeus vannamei with acute hepatopancreatic necrosis disease

(2020) Pengsheng Dong et al.   AQUACULTURE

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Strain-specific changes in the gut microbiota profiles of the white shrimp Litopenaeus vannamei in response to cold stress

(2019) Jiajia Liu et al.   AQUACULTURE

Effect of stock density on the microbial community in biofloc water and Pacific white shrimp (Litopenaeus vannamei) gut microbiota

(2019) Yale Deng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Determining Microbial Niche Breadth in the Environment for Better Ecosystem Fate Predictions

(2019) Emilie E. L. Muller   mSystems

Is Super-Intensification the Solution to Shrimp Production and Export Sustainability?

(2019) Nguyen et al.   Sustainability

The effect of different carbon sources on water quality, microbial community and structure of biofloc systems

(2018) Min Deng et al.   AQUACULTURE

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Application of enzyme-hydrolyzed cassava dregs as a carbon source in aquaculture

(2018) Qian Shang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Community Assembly Processes of the Microbial Rare Biosphere

(2018) Xiu Jia et al.   TRENDS IN MICROBIOLOGY

Methanogens: biochemical background and biotechnological applications

(2018) Franziska Enzmann et al.   AMB Express

Microbiota assemblages of water, sediment, and intestine and their associations with environmental factors and shrimp physiological health

(2018) Fei Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biofilm consumption shapes the intestinal microbiota of shrimp (Penaeus vannamei )

(2018) Estefanía Garibay-Valdez et al.   AQUACULTURE NUTRITION

A Review on Gut Remediation of Selected Environmental Contaminants: Possible Roles of Probiotics and Gut Microbiota

(2018) Pengya Feng et al.   Nutrients

Cohesion: a method for quantifying the connectivity of microbial communities

(2017) Cristina M Herren et al.   ISME Journal

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system

(2016) Emilie Cardona et al.   BMC MICROBIOLOGY

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

r-strategist versus K-strategist for the application in bioremediation of hydrocarbon-contaminated soils

(2016) Joanna Brzeszcz et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning

(2016) Manuel Delgado-Baquerizo et al.   JOURNAL OF ECOLOGY

Optimal network topology for structural robustness based on natural connectivity

(2016) Guan-sheng Peng et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

(2014) Peng Cui et al.   GENOME BIOLOGY

Nitrogen and Phosphorus Dynamics in the Biofloc Production of the Pacific White Shrimp,Litopenaeus vannamei

(2013) Kassio Rios da Silva et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY

Influence of carbohydrate addition on nitrogen transformations and greenhouse gas emissions of intensive aquaculture system

(2013) Zhen Hu et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Natural Connectivity of Complex Networks

(2010) Wu Jun et al.   CHINESE PHYSICS LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS