Microbiota assemblages of water, sediment, and intestine and their associations with environmental factors and shrimp physiological health

Integrating gut microbiota immaturity and disease-discriminatory taxa to diagnose the initiation and severity of shrimp disease

(2017) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

Advances, challenges, and directions in shrimp disease control: the guidelines from an ecological perspective

(2016) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparison of cultivable bacterial communities associated with Pacific white shrimp (Litopenaeus vannamei) larvae at different health statuses and growth stages

(2016) Yanfen Zheng et al.   AQUACULTURE

Dynamic changes of microbial communities in Litopenaeus vannamei cultures and the effects of environmental factors

(2016) Hao Zhang et al.   AQUACULTURE

Bacterial dynamics in intestines of the black tiger shrimp and the Pacific white shrimp during Vibrio harveyi exposure

(2016) Wanilada Rungrassamee et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Characterizing bacterial communities in tilapia pond surface sediment and their responses to pond differences and temporal variations

(2016) Limin Fan et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Bacterial abundance and diversity in pond water supplied with different feeds

(2016) Ya Qin et al.   Scientific Reports

Changes in intestinal bacterial communities are closely associated with shrimp disease severity

(2015) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Functional and genomic diversity of methylotrophic Rhodocyclaceae: description of Methyloversatilis discipulorum sp. nov.

(2015) Nicole E. Smalley et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The use of probiotics in aquaculture

(2015) N.V. Hai   JOURNAL OF APPLIED MICROBIOLOGY

The impact of rearing environment on the development of gut microbiota in tilapia larvae

(2015) Christos Giatsis et al.   Scientific Reports

The application of bacterial indicator phylotypes to predict shrimp health status

(2014) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of dietary protein level on selected parameters of immune and antioxidant systems, and growth performance of juvenile Litopenaeus vannamei reared in zero-water exchange biofloc-based culture tanks

(2014) Wu-Jie Xu et al.   AQUACULTURE

Changes in the intestinal bacterial community during the growth of white shrimp,Litopenaeus vannamei

(2014) Zhaobin Huang et al.   AQUACULTURE RESEARCH

Diet type dictates the gut microbiota and the immune response against Yersinia ruckeri in rainbow trout (Oncorhynchus mykiss)

(2014) Hans-Christian Ingerslev et al.   FISH & SHELLFISH IMMUNOLOGY

Isolation of a putative probiotic strain S12 and its effect on growth performance, non-specific immunity and disease-resistance of white shrimp, Litopenaeus vannamei

(2014) Hongyu Liu et al.   FISH & SHELLFISH IMMUNOLOGY

The cellular community in the intestine of the shrimp Penaeus penicillatus and its culture environments

(2014) Chun-zhong Wang et al.   FISHERIES SCIENCE

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Impacts of infection with different toxigenic Clostridium difficile strains on faecal microbiota in children

(2014) Zongxin Ling et al.   Scientific Reports

Bacterial community of pond's water, sediment and in the guts of tilapia (Oreochromis niloticus) juveniles characterized by fluorescentin situhybridization technique

(2013) Alessandro Del'Duca et al.   AQUACULTURE RESEARCH

Bacterioplankton assemblages as biological indicators of shrimp health status

(2013) Demin Zhang et al.   ECOLOGICAL INDICATORS

Dietary synbiotic application modulates Atlantic salmon (Salmo salar) intestinal microbial communities and intestinal immunity

(2013) A. Abid et al.   FISH & SHELLFISH IMMUNOLOGY

Administration of Bacillus subtilis strains in the rearing water enhances the water quality, growth performance, immune response, and resistance against Vibrio harveyi infection in juvenile white shrimp, Litopenaeus vannamei

(2013) Hadi Zokaeifar et al.   FISH & SHELLFISH IMMUNOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Pathogen–host–environment interplay and disease emergence

(2013) Anneke Engering et al.   Emerging Microbes & Infections

Insight into bacterial population in aquaculture systems and its implication

(2012) J.P. Blancheton et al.   AQUACULTURAL ENGINEERING

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

The influence of predation and competition on the survival of commensal and pathogenic fecal bacteria in aquatic habitats

(2012) Pauline Wanjugi et al.   ENVIRONMENTAL MICROBIOLOGY

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau

(2012) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Discovery of immune molecules and their crucial functions in shrimp immunity

(2012) Anchalee Tassanakajon et al.   FISH & SHELLFISH IMMUNOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Hydrological and Water Quality Indices as management tools in marine shrimp culture

(2011) N.C. Ferreira et al.   AQUACULTURE

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Probiotic applications of two dominant gut Bacillus strains with antagonistic activity improved the growth performance and immune responses of grouper Epinephelus coioides

(2010) Yun-Zhang Sun et al.   FISH & SHELLFISH IMMUNOLOGY

Host–microbiota interactions within the fish intestinal ecosystem

(2010) T Pérez et al.   Mucosal Immunology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Expression of immune-related genes in the digestive organ of shrimp, Penaeus monodon, after an oral infection by Vibrio harveyi

(2009) Wipasiri Soonthornchai et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY