Gut microbiota predicts body fat change following a low-energy diet: a PREVIEW intervention study

The baseline gut microbiota directs dieting-induced weight loss trajectories

(2021) Zhuye Jie et al.   GASTROENTEROLOGY

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

(2021) Francesco Asnicar et al.   NATURE MEDICINE

Caloric restriction disrupts the microbiota and colonization resistance

(2021) Reiner Jumpertz von Schwartzenberg et al.   NATURE

Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling

(2020) Ching Jian et al.   PLoS One

Gut microbiota plasticity is correlated with sustained weight loss on a low-carb or low-fat dietary intervention

(2020) Jessica A. Grembi et al.   Scientific Reports

Function of Akkermansia muciniphila in Obesity: Interactions With Lipid Metabolism, Immune Response and Gut Systems

(2020) Yu Xu et al.   Frontiers in Microbiology

Role of gut microbiota in type 2 diabetes pathophysiology

(2020) Manoj Gurung et al.   EBioMedicine

Impact of short-term overfeeding of saturated or unsaturated fat or sugars on the gut microbiota in relation to liver fat in obese and overweight adults

(2020) Ching Jian et al.   CLINICAL NUTRITION

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Effects of underfeeding and oral vancomycin on gut microbiome and nutrient absorption in humans

(2020) Alessio Basolo et al.   NATURE MEDICINE

Randomised Double-Blind Placebo-Controlled Trial of Inulin with Metronidazole in Non-Alcoholic Fatty Liver Disease (NAFLD)

(2020) Clara Yieh Lin Chong et al.   Nutrients

The Gut Microbiota in Prediabetes and Diabetes: A Population-Based Cross-Sectional Study

(2020) Hao Wu et al.   Cell Metabolism

Human postprandial responses to food and potential for precision nutrition

(2020) Sarah E. Berry et al.   NATURE MEDICINE

The effect of ultra-processed very low-energy diets on gut microbiota and metabolic outcomes in individuals with obesity: A systematic literature review

(2020) Melissa Lane et al.   Obesity Research & Clinical Practice

PREVIEW ‐ Results from a 3‐year randomised 2 x 2 factorial multinational trial investigating the role of protein, glycemic index and physical activity for prevention of type‐2 diabetes

(2020) Anne Raben et al.   DIABETES OBESITY & METABOLISM

Data integration for prediction of weight loss in randomized controlled dietary trials

(2020) Rikke Linnemann Nielsen et al.   Scientific Reports

Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids

(2019) Kai Wang et al.   Cell Reports

Impact of Gut Microbiota on Host Glycemic Control

(2019) Céline Gérard et al.   Frontiers in Endocrinology

Longitudinal multi-omics of host–microbe dynamics in prediabetes

(2019) Wenyu Zhou et al.   NATURE

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity

(2019) Maria Carlota Dao et al.   Frontiers in Physiology

Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans

(2019) Abigail J. Johnson et al.   Cell Host & Microbe

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Supplementation with Akkermansia muciniphila in overweight and obese human volunteers: a proof-of-concept exploratory study

(2019) Clara Depommier et al.   NATURE MEDICINE

A structured weight loss program increases gut microbiota phylogenetic diversity and reduces levels of Collinsella in obese type 2 diabetics: A pilot study

(2019) Fabian Frost et al.   PLoS One

Dissecting the role of the gut microbiota and diet on visceral fat mass accumulation

(2019) Caroline I. Le Roy et al.   Scientific Reports

Lean NAFLD : A Distinct Entity Shaped by Differential Metabolic Adaptation

(2019) Fei Chen et al.   HEPATOLOGY

The Role of the Gut Microbiome in Predicting Response to Diet and the Development of Precision Nutrition Models. Part II: Results

(2019) Riley L Hughes et al.   Advances in Nutrition

The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health

(2019) Jillian L. Waters et al.   BMC BIOLOGY

2. Classification and Diagnosis of Diabetes: Standards of Medical Care in Diabetes—2020

(2019)   DIABETES CARE

Relationship between gut microbiota and circulating metabolites in population-based cohorts

(2019) Dina Vojinovic et al.   Nature Communications

Changes in body composition with a hypocaloric diet combined with sedentary, moderate and high-intense physical activity: a randomized controlled trial

(2019) A. Hernández-Reyes et al.   BMC Womens Health

Is the impact of starvation on the gut microbiota specific or unspecific to anorexia nervosa? A narrative review based on a systematic literature search

(2018) Isabelle Mack et al.   Current Neuropharmacology

Saturated Fat Is More Metabolically Harmful for the Human Liver Than Unsaturated Fat or Simple Sugars

(2018) Panu K. Luukkonen et al.   DIABETES CARE

Gut commensalParabacteroides goldsteiniiplays a predominant role in the anti-obesity effects of polysaccharides isolated fromHirsutella sinensis

(2018) Tsung-Ru Wu et al.   GUT

Prevotella-to-Bacteroides ratio predicts body weight and fat loss success on 24-week diets varying in macronutrient composition and dietary fiber: results from a post-hoc analysis

(2018) Mads F. Hjorth et al.   INTERNATIONAL JOURNAL OF OBESITY

Primary care-led weight management for remission of type 2 diabetes (DiRECT): an open-label, cluster-randomised trial

(2018) Michael EJ Lean et al.   LANCET

Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes

(2018) Liping Zhao et al.   SCIENCE

Butyrate: A Double-Edged Sword for Health?

(2018) Hu Liu et al.   Advances in Nutrition

Temporal variability and stability of the fecal microbiome: the Multiethnic Cohort Study

(2018) Benjamin C Fu et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The Inhibitory Innate Immune Sensor NLRP12 Maintains a Threshold against Obesity by Regulating Gut Microbiota Homeostasis

(2018) Agnieszka D. Truax et al.   Cell Host & Microbe

Men and women respond differently to rapid weight loss: Metabolic outcomes of a multi-centre intervention study after a low-energy diet in 2500 overweight, individuals with pre-diabetes (PREVIEW)

(2018) Pia Christensen et al.   DIABETES OBESITY & METABOLISM

Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women

(2018) José O. Alemán et al.   Journal of Translational Medicine

Gut microbiota mediates the anti-obesity effect of calorie restriction in mice

(2018) Shuo Wang et al.   Scientific Reports

Doctor Referral of Overweight People to Low Energy total diet replacement Treatment (DROPLET): pragmatic randomised controlled trial

(2018) Nerys M Astbury et al.   BMJ-British Medical Journal

Effects of Weight-Loss Interventions on Short-Chain Fatty Acid Concentrations in Blood and Feces of Adults: A Systematic Review

(2018) Solomon A Sowah et al.   Advances in Nutrition

Decaffeinated green and black tea polyphenols decrease weight gain and alter microbiome populations and function in diet-induced obese mice

(2017) Susanne M. Henning et al.   EUROPEAN JOURNAL OF NUTRITION

Gene-Diet Interaction and Precision Nutrition in Obesity

(2017) Yoriko Heianza et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Alterations in gut microbiota associated with a cafeteria diet and the physiological consequences in the host

(2017) J M del Bas et al.   INTERNATIONAL JOURNAL OF OBESITY

Pre-treatment microbial Prevotella-to-Bacteroides ratio, determines body fat loss success during a 6-month randomized controlled diet intervention

(2017) M F Hjorth et al.   INTERNATIONAL JOURNAL OF OBESITY

Microbiota-Gut-Brain Axis: Modulator of Host Metabolism and Appetite

(2017) Marcel van de Wouw et al.   JOURNAL OF NUTRITION

Global aetiology and epidemiology of type 2 diabetes mellitus and its complications

(2017) Yan Zheng et al.   Nature Reviews Endocrinology

Weight-loss interventions and gut microbiota changes in overweight and obese patients: a systematic review

(2017) F. B. Seganfredo et al.   Obesity Reviews

PREVIEW: Prevention of Diabetes through Lifestyle Intervention and Population Studies in Europe and around the World. Design, Methods, and Baseline Participant Description of an Adult Cohort Enrolled into a Three-Year Randomised Clinical Trial

(2017) Mikael Fogelholm et al.   Nutrients

Starter Feeding Supplementation Alters Colonic Mucosal Bacterial Communities and Modulates Mucosal Immune Homeostasis in Newborn Lambs

(2017) Junhua Liu et al.   Frontiers in Microbiology

Effect of caloric restriction on gut permeability, inflammation markers, and fecal microbiota in obese women

(2017) Beate Ott et al.   Scientific Reports

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Beneficial Effects of a Dietary Weight Loss Intervention on Human Gut Microbiome Diversity and Metabolism Are Not Sustained during Weight Maintenance

(2016) Femke-Anouska Heinsen et al.   Obesity Facts

Interpreting Prevotella and Bacteroides as biomarkers of diet and lifestyle

(2016) Anastassia Gorvitovskaia et al.   Microbiome

Characterization of the Gut Microbial Community of Obese Patients Following a Weight-Loss Intervention Using Whole Metagenome Shotgun Sequencing

(2016) Sandrine Louis et al.   PLoS One

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

Toll-like receptor 5 in obesity: The role of gut microbiota and adipose tissue inflammation

(2015) Satu Pekkala et al.   Obesity

Effects of Surgical and Dietary Weight Loss Therapy for Obesity on Gut Microbiota Composition and Nutrient Absorption

(2015) Antje Damms-Machado et al.   Biomed Research International

Mucin glycan foraging in the human gut microbiome

(2015) Louise E. Tailford et al.   Frontiers in Genetics

Building Predictive Models inRUsing thecaretPackage

(2015) Max Kuhn   Journal of Statistical Software

Is eating behavior manipulated by the gastrointestinal microbiota? Evolutionary pressures and potential mechanisms

(2014) Joe Alcock et al.   BIOESSAYS

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Gut Microbiota Signatures Predict Host and Microbiota Responses to Dietary Interventions in Obese Individuals

(2014) Katri Korpela et al.   PLoS One

Healthy strategies for successful weight loss and weight maintenance: a systematic review

(2013) Stephanie Ramage et al.   Applied Physiology Nutrition and Metabolism

Impact of a very low-energy diet on the fecal microbiota of obese individuals

(2013) C. D. Simões et al.   EUROPEAN JOURNAL OF NUTRITION

Dietary intervention impact on gut microbial gene richness

(2013) Aurélie Cotillard et al.   NATURE

Obesity and Severe Obesity Forecasts Through 2030

(2012) Eric A. Finkelstein et al.   AMERICAN JOURNAL OF PREVENTIVE MEDICINE

Diet-Induced Alterations of Host Cholesterol Metabolism Are Likely To Affect the Gut Microbiota Composition in Hamsters

(2012) Inés Martínez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Metabolically healthy obesity’: Origins and implications

(2012) Gerald V. Denis et al.   MOLECULAR ASPECTS OF MEDICINE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Gut microbiota interactions with obesity, insulin resistance and type 2 diabetes

(2011) Eduardo Esteve et al.   CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE

Problems in identifying predictors and correlates of weight loss and maintenance: implications for weight control therapies based on behaviour change

(2011) J. Stubbs et al.   Obesity Reviews

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Association Between Composition of the Human Gastrointestinal Microbiome and Development of Fatty Liver With Choline Deficiency

(2010) Melanie D. Spencer et al.   GASTROENTEROLOGY

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS