Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling
Authors
Keywords
Microbiome, Bacteria, Ribosomal RNA, Next-generation sequencing, DNA extraction, Flow cytometry, Polymerase chain reaction, Statistical data
Journal
PLoS One
Volume 15, Issue 1, Pages e0227285
Publisher
Public Library of Science (PLoS)
Online
2020-01-16
DOI
10.1371/journal.pone.0227285
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Establishing microbial composition measurement standards with reference frames
- (2019) James T. Morton et al. Nature Communications
- Saturated Fat Is More Metabolically Harmful for the Human Liver Than Unsaturated Fat or Simple Sugars
- (2018) Panu K. Luukkonen et al. DIABETES CARE
- Reproducibility and repeatability of six high-throughput 16S rDNA sequencing protocols for microbiota profiling
- (2018) Sajan C. Raju et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Intestinal microbiota development and gestational age in preterm neonates
- (2018) Katri Korpela et al. Scientific Reports
- Absolute quantitation of microbiota abundance in environmental samples
- (2018) Andrzej Tkacz et al. Microbiome
- PCR-based quantification of taxa-specific abundances in microbial communities: Quantifying and avoiding common pitfalls
- (2018) Fabian Bonk et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants
- (2018) Katri Korpela et al. Microbiome
- Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production
- (2017) Nicole Reichardt et al. ISME Journal
- Quantitative microbiome profiling links gut community variation to microbial load
- (2017) Doris Vandeputte et al. NATURE
- Towards standards for human fecal sample processing in metagenomic studies
- (2017) Paul I Costea et al. NATURE BIOTECHNOLOGY
- Composition and immuno-stimulatory properties of extracellular DNA from mouse gut flora
- (2017) Ce Qi et al. WORLD JOURNAL OF GASTROENTEROLOGY
- Microbiome Datasets Are Compositional: And This Is Not Optional
- (2017) Gregory B. Gloor et al. Frontiers in Microbiology
- Compositional data analysis of the microbiome: fundamentals, tools, and challenges
- (2016) Matthew C.B. Tsilimigras et al. ANNALS OF EPIDEMIOLOGY
- Formation of propionate and butyrate by the human colonic microbiota
- (2016) Petra Louis et al. ENVIRONMENTAL MICROBIOLOGY
- Absolute quantification of microbial taxon abundances
- (2016) Ruben Props et al. ISME Journal
- Flow Cytometric Assessment of Bacterial Abundance in Soils, Sediments and Sludge
- (2016) Aline Frossard et al. Frontiers in Microbiology
- Adjusting microbiome profiles for differences in microbial load by spike-in bacteria
- (2016) Frank Stämmler et al. Microbiome
- Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants
- (2015) Zachery T Lewis et al. Microbiome
- Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
- (2014) Mikhail Tikhonov et al. ISME Journal
- rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development
- (2014) Steven F. Stoddard et al. NUCLEIC ACIDS RESEARCH
- Combining real-time PCR and next-generation DNA sequencing to provide quantitative comparisons of fungal aerosol populations
- (2013) Karen C. Dannemiller et al. ATMOSPHERIC ENVIRONMENT
- Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities
- (2012) Juan M. Gonzalez et al. PLoS One
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
- (2010) Anne Salonen et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Use of flow cytometric methods for single-cell analysis in environmental microbiology
- (2008) Kamila Czechowska et al. CURRENT OPINION IN MICROBIOLOGY
- Analyzing real-time PCR data by the comparative CT method
- (2008) Thomas D Schmittgen et al. Nature Protocols
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now