Starter Feeding Supplementation Alters Colonic Mucosal Bacterial Communities and Modulates Mucosal Immune Homeostasis in Newborn Lambs

Starter feeding altered ruminal epithelial bacterial communities and some key immune-related genes' expression before weaning in lambs1

(2017) J. Liu et al.   JOURNAL OF ANIMAL SCIENCE

Age and feeding system (supplemental feeding versus grazing) modulates colonic bacterial succession and host mucosal immune maturation in goats1

(2016) J. Jiao et al.   JOURNAL OF ANIMAL SCIENCE

Rumen bacterial communities can be acclimated faster to high concentrate diets than currently implemented feedlot programs

(2016) C.L. Anderson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Grain-rich diets altered the colonic fermentation and mucosa-associated bacterial communities and induced mucosal injuries in goats

(2016) Huimin Ye et al.   Scientific Reports

Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs

(2016) Weimin Wang et al.   Scientific Reports

Rumen development process in goats as affected by supplemental feeding v. grazing: age-related anatomic development, functional achievement and microbial colonisation

(2015) Jinzhen Jiao et al.   BRITISH JOURNAL OF NUTRITION

Postnatal bacterial succession and functional establishment of hindgut in supplemental feeding and grazing goats1

(2015) J. Z. Jiao et al.   JOURNAL OF ANIMAL SCIENCE

Gut biogeography of the bacterial microbiota

(2015) Gregory P. Donaldson et al.   NATURE REVIEWS MICROBIOLOGY

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats

(2015) Jun-hua Liu et al.   Frontiers in Microbiology

Manipulating rumen microbiome and fermentation through interventions during early life: a review

(2015) David R. Yáñez-Ruiz et al.   Frontiers in Microbiology

Atypical bacterial rRNA operon structure is prevalent within the Lachnospiraceae, and use of the 16S-23S rRNA internal transcribed spacer region for the rapid identification of ruminal Butyrivibrio and Pseudobutyrivibrio strains

(2014) Dong Li et al.   ANNALS OF MICROBIOLOGY

Prepartum and Postpartum Rumen Fluid Microbiomes: Characterization and Correlation with Production Traits in Dairy Cows

(2014) Fabio S. Lima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Taxonomic Identification of Commensal Bacteria Associated with the Mucosa and Digesta throughout the Gastrointestinal Tracts of Preweaned Calves

(2014) Nilusha Malmuthuge et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of postextraction algal residue supplementation on the ruminal microbiome of steers consuming low-quality forage1

(2014) J. C. McCann et al.   JOURNAL OF ANIMAL SCIENCE

A high-grain diet causes massive disruption of ruminal epithelial tight junctions in goats

(2013) Jun-hua Liu et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats

(2013) Barbara U. Metzler-Zebeli et al.   ANAEROBE

Nutritional intervention in early life to manipulate rumen microbial colonization and methane output by kid goats postweaning1

(2013) L. Abecia et al.   JOURNAL OF ANIMAL SCIENCE

Effect of calf starter feeding on gut microbial diversity and expression of genes involved in host immune responses and tight junctions in dairy calves during weaning transition

(2013) Nilusha Malmuthuge et al.   JOURNAL OF DAIRY SCIENCE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets

(2012) Asma Zened et al.   FEMS MICROBIOLOGY ECOLOGY

High Fat Diet-Induced Gut Microbiota Exacerbates Inflammation and Obesity in Mice via the TLR4 Signaling Pathway

(2012) Kyung-Ah Kim et al.   PLoS One

Variation of bacterial communities and expression of Toll-like receptor genes in the rumen of steers differing in susceptibility to subacute ruminal acidosis

(2012) Yanhong Chen et al.   VETERINARY MICROBIOLOGY

Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis

(2011) Michael A. Steele et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Metabolic adaptation to a high-fat diet is associated with a change in the gut microbiota

(2011) Matteo Serino et al.   GUT

The role of bacteria and pattern-recognition receptors in Crohn's disease

(2011) Si Ming Man et al.   Nature Reviews Gastroenterology & Hepatology

Oral administration of Parabacteroides distasonis antigens attenuates experimental murine colitis through modulation of immunity and microbiota composition

(2010) M. Kverka et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes

(2010) Ben P. Willing et al.   GASTROENTEROLOGY

Highlighting new phylogenetic specificities of Crohnʼs disease microbiota

(2010) S. Mondot et al.   INFLAMMATORY BOWEL DISEASES

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Identification and characterization of the bovine G protein-coupled receptor GPR41 and GPR43 genes

(2009) A. Wang et al.   JOURNAL OF DAIRY SCIENCE