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Title
Microbiomes in the Challenger Deep slope and bottom-axis sediments
Authors
Keywords
-
Journal
Nature Communications
Volume 13, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-03-21
DOI
10.1038/s41467-022-29144-4
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Note: Only part of the references are listed.- Potential and expression of carbohydrate utilization by marine fungi in the global ocean
- (2021) Federico Baltar et al. Microbiome
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- (2021) Sherlynette Pérez Castro et al. ISME Journal
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- (2021) Bo Thamdrup et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2020) Jiangtao Li et al. NATURE
- A complete domain-to-species taxonomy for Bacteria and Archaea
- (2020) Donovan H. Parks et al. NATURE BIOTECHNOLOGY
- Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres
- (2020) Anirban Chakraborty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Meta‐Omics highlights the diversity, activity and adaptations of fungi in deep oceanic crust
- (2020) Maxence Quemener et al. ENVIRONMENTAL MICROBIOLOGY
- Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years
- (2020) Yuki Morono et al. Nature Communications
- Insights into the Vertical Stratification of Microbial Ecological Roles across the Deepest Seawater Column on Earth
- (2020) Chun-Xu Xue et al. Microorganisms
- Vertical profiles of arsenic and arsenic species transformations in deep-sea sediment, Nankai Trough, offshore Japan
- (2019) Harue Masuda et al. Progress in Earth and Planetary Science
- Megathrust earthquake drives drastic organic carbon supply to the hadal trench
- (2019) A. Kioka et al. Scientific Reports
- A new genomic blueprint of the human gut microbiota
- (2019) Alexandre Almeida et al. NATURE
- Organic matter diagenesis in hadal setting: Insights from the pore-water geochemistry of the Mariana Trench sediments
- (2019) Shuangquan Liu et al. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments
- (2019) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Complete arsenic-based respiratory cycle in the marine microbial communities of pelagic oxygen-deficient zones
- (2019) Jaclyn K. Saunders et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbial Diversity and Connectivity in Deep-Sea Sediments of the South Atlantic Polar Front
- (2019) Gilda Varliero et al. Frontiers in Microbiology
- Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep
- (2019) Guojie Cui et al. PeerJ
- A global survey of arsenic-related genes in soil microbiomes
- (2019) Taylor K. Dunivin et al. BMC BIOLOGY
- In situ meta‐omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench
- (2019) Zhao‐Ming Gao et al. ENVIRONMENTAL MICROBIOLOGY
- Along-strike variation in slab geometry at the southern Mariana subduction zone revealed by seismicity through ocean bottom seismic experiments
- (2019) Gaohua Zhu et al. GEOPHYSICAL JOURNAL INTERNATIONAL
- Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
- (2019) Evan Bolyen et al. NATURE BIOTECHNOLOGY
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Anaerobic Degradation of Non-Methane Alkanes by “Candidatus Methanoliparia” in Hydrocarbon Seeps of the Gulf of Mexico
- (2019) Rafael Laso-Pérez et al. mBio
- KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold
- (2019) Takuya Aramaki et al. BIOINFORMATICS
- Drivers of Bacterial α- and β-Diversity Patterns and Functioning in Subsurface Hadal Sediments
- (2019) Eugenio Rastelli et al. Frontiers in Microbiology
- Microbial community and geochemical analyses of trans-trench sediments for understanding the roles of hadal environments
- (2019) Satoshi Hiraoka et al. ISME Journal
- OUP accepted manuscript
- (2018) BIOINFORMATICS
- Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench
- (2018) Takuro Nunoura et al. MICROBES AND ENVIRONMENTS
- Habitat heterogeneity of hadal trenches: Considerations and implications for future studies
- (2018) Heather A. Stewart et al. PROGRESS IN OCEANOGRAPHY
- MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis
- (2018) Gherman V. Uritskiy et al. Microbiome
- Microorganism remediation strategies towards heavy metals
- (2018) Kun Yin et al. CHEMICAL ENGINEERING JOURNAL
- Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean
- (2018) Yong Wang et al. ENVIRONMENTAL MICROBIOLOGY
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
- (2018) Nina Dombrowski et al. Nature Communications
- Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench
- (2018) Xinxu Zhang et al. Frontiers in Microbiology
- Distribution of Arsenic Resistance Genes in Prokaryotes
- (2018) Ibtissem Ben Fekih et al. Frontiers in Microbiology
- Arsenobetaine: an ecophysiologically important organoarsenical confers cytoprotection against osmotic stress and growth temperature extremes
- (2017) Tamara Hoffmann et al. ENVIRONMENTAL MICROBIOLOGY
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- (2017) Matthew R Olm et al. ISME Journal
- Provenances, distribution, and accumulation of organic matter in the southern Mariana Trench rim and slope: Implication for carbon cycle and burial in hadal trenches
- (2017) Min Luo et al. MARINE GEOLOGY
- dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation
- (2017) Le Huang et al. NUCLEIC ACIDS RESEARCH
- Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
- (2017) Maria G. Pachiadaki et al. SCIENCE
- The Evolution of Bacterial Genome Architecture
- (2017) Louis-Marie Bobay et al. Frontiers in Genetics
- Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees
- (2016) Kazunori D. Yamada et al. BIOINFORMATICS
- Hydroxylamine-dependent anaerobic ammonium oxidation (anammox) by “Candidatus Brocadia sinica”
- (2016) Mamoru Oshiki et al. ENVIRONMENTAL MICROBIOLOGY
- Topography-driven isolation, speciation and a global increase of endemism with elevation
- (2016) Manuel J. Steinbauer et al. GLOBAL ECOLOGY AND BIOGEOGRAPHY
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- (2016) Ting Peng et al. ISME Journal
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- (2016) Wouter J. Maalcke et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
- (2016) Minoru Kanehisa et al. JOURNAL OF MOLECULAR BIOLOGY
- The Guaymas Basin Hiking Guide to Hydrothermal Mounds, Chimneys, and Microbial Mats: Complex Seafloor Expressions of Subsurface Hydrothermal Circulation
- (2016) Andreas Teske et al. Frontiers in Microbiology
- Arsenobetaine: The Ongoing Mystery
- (2016) Aleksandra Popowich et al. National Science Review
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- (2015) Yu-Wei Wu et al. BIOINFORMATICS
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- (2015) Donovan H. Parks et al. GENOME RESEARCH
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- (2014) Alexandros Stamatakis BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Identification and Characterization of Arsenite Methyltransferase from an Archaeon, Methanosarcina acetivorans C2A
- (2014) Pei-Pei Wang et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Implications of streamlining theory for microbial ecology
- (2014) Stephen J Giovannoni et al. ISME Journal
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Selenoproteins: Molecular Pathways and Physiological Roles
- (2014) Vyacheslav M. Labunskyy et al. PHYSIOLOGICAL REVIEWS
- Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
- (2013) Ramiro Logares et al. ENVIRONMENTAL MICROBIOLOGY
- High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth
- (2013) Ronnie N. Glud et al. Nature Geoscience
- Accurate and universal delineation of prokaryotic species
- (2013) Daniel R Mende et al. NATURE METHODS
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Linking selenium biogeochemistry to the sulfur-dependent biological detoxification of arsenic
- (2012) Raoul-Marie Couture et al. ENVIRONMENTAL MICROBIOLOGY
- Arsenic Speciation in Blue Mussels (Mytilus edulis) Along a Highly Contaminated Arsenic Gradient
- (2012) K. J. Whaley-Martin et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Arsenobetaine formation in plankton: a review of studies at the base of the aquatic food chain
- (2012) G. Caumette et al. JOURNAL OF ENVIRONMENTAL MONITORING
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Molecular mechanism of anaerobic ammonium oxidation
- (2011) Boran Kartal et al. NATURE
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Identification of ribosomal RNA genes in metagenomic fragments
- (2009) Ying Huang et al. BIOINFORMATICS
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Hadal trenches: the ecology of the deepest places on Earth
- (2009) Alan J. Jamieson et al. TRENDS IN ECOLOGY & EVOLUTION
- Glycine cleavage system: reaction mechanism, physiological significance, and hyperglycinemia
- (2008) Goro KIKUCHI et al. PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES
- Trends in Selenium Utilization in Marine Microbial World Revealed through the Analysis of the Global Ocean Sampling (GOS) Project
- (2008) Yan Zhang et al. PLoS Genetics
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