Recycling and metabolic flexibility dictate life in the lower oceanic crust

Abiotic methane synthesis and serpentinization in olivine-hosted fluid inclusions

(2019) Frieder Klein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Atlantis Bank Gabbro Massif, Southwest Indian Ridge

(2019) Henry J. B. Dick et al.   Progress in Earth and Planetary Science

Dynamic Accretion Beneath a Slow‐Spreading Ridge Segment: IODP Hole 1473A and the Atlantis Bank Oceanic Core Complex

(2019) H. J. B. Dick et al.   JOURNAL OF GEOPHYSICAL RESEARCH-SOLID EARTH

Microbial decomposition of marine dissolved organic matter in cool oceanic crust

(2018) Sunita R. Shah Walter et al.   Nature Geoscience

Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

(2018) Cody S. Sheik et al.   Frontiers in Microbiology

Magmatism, serpentinization and life: Insights through drilling the Atlantis Massif (IODP Expedition 357)

(2018) Gretchen L. Früh-Green et al.   LITHOS

Viable cyanobacteria in the deep continental subsurface

(2018) Fernando Puente-Sánchez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer

(2017) Benjamin J Tully et al.   ISME Journal

Thriving or surviving? Evaluating active microbial guilds in Baltic Sea sediment

(2017) Laura A. Zinke et al.   Environmental Microbiology Reports

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients

(2017) Alyse K. Hawley et al.   Nature Communications

Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

(2016) Sean P Jungbluth et al.   ISME Journal

Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

(2016) Angela Glassing et al.   Gut Pathogens

Investigation of the Chemical Interface in the Soybean–Aphid and Rice–Bacteria Interactions Using MALDI-Mass Spectrometry Imaging

(2015) Adam T. Klein et al.   ANALYTICAL CHEMISTRY

Mono- and Dialkyl Glycerol Ether Lipids in Anaerobic Bacteria: Biosynthetic Insights from the Mesophilic Sulfate Reducer Desulfatibacillum alkenivorans PF2803T

(2015) Vincent Grossi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Pho regulon: a huge regulatory network in bacteria

(2015) Fernando Santos-Beneit   Frontiers in Microbiology

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

An improved method for the analysis of archaeal and bacterial ether core lipids

(2013) Kevin W. Becker et al.   ORGANIC GEOCHEMISTRY

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

(2012) Huei-Ting Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei, a Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Producer

(2012) J. Han et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Comparative genomics study of polyhydroxyalkanoates (PHA) and ectoine relevant genes from Halomonas sp. TD01 revealed extensive horizontal gene transfer events and co-evolutionary relationships

(2011) Lei Cai et al.   Microbial Cell Factories

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Deep subseafloor microbial cells on physiological standby

(2011) B. B. Jorgensen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence

(2010) Nuria Fonknechten et al.   BMC GENOMICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pangean great lake paleoecology on the cusp of the end-Triassic extinction

(2010) Jessica H. Whiteside et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Propane Respiration Jump-Starts Microbial Response to a Deep Oil Spill

(2010) David L. Valentine et al.   SCIENCE

Microbial Provinces in the Subseafloor

(2009) Matthew O. Schrenk et al.   Annual Review of Marine Science

Fungal Diversity in Deep-Sea Hydrothermal Ecosystems

(2009) T. Le Calvez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Structural diversity and fate of intact polar lipids in marine sediments

(2009) Julius Sebastian Lipp et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration

(2008) Cara M. Santelli et al.   ENVIRONMENTAL MICROBIOLOGY

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH