UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2022-06-02
DOI
10.1093/nar/gkac467
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Phages and their satellites encode hotspots of antiviral systems
- (2022) François Rousset et al. Cell Host & Microbe
- The impact of genetic diversity on gene essentiality within the Escherichia coli species
- (2021) François Rousset et al. Nature Microbiology
- Massive expansion of human gut bacteriophage diversity
- (2021) Luis F. Camarillo-Guerrero et al. CELL
- Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter
- (2021) Moïra B Dion et al. NUCLEIC ACIDS RESEARCH
- Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features
- (2021) Natalya Yutin et al. Nature Communications
- Methylation of rRNA as a host defense against rampant group II intron retrotransposition
- (2021) Justin M. Waldern et al. Mobile DNA
- Microbial Arsenal of Antiviral Defenses. Part II
- (2021) Artem B. Isaev et al. BIOCHEMISTRY-MOSCOW
- A nucleotide-sensing endonuclease from the Gabija bacterial defense system
- (2021) Rui Cheng et al. NUCLEIC ACIDS RESEARCH
- Expanding Diversity of Firmicutes Single-Strand Annealing Proteins: A Putative Role of Bacteriophage-Host Arms Race
- (2021) Kamil Steczkiewicz et al. Frontiers in Microbiology
- Thousands of previously unknown phages discovered in whole-community human gut metagenomes
- (2021) Sean Benler et al. Microbiome
- tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes
- (2021) Patricia P Chan et al. NUCLEIC ACIDS RESEARCH
- Identification and classification of reverse transcriptases in bacterial genomes and metagenomes
- (2021) Fatemeh Sharifi et al. NUCLEIC ACIDS RESEARCH
- Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more
- (2021) Ryota Sugimoto et al. PLoS Computational Biology
- Estimating the power of sequence covariation for detecting conserved RNA structure
- (2020) Elena Rivas et al. BIOINFORMATICS
- Improved protein structure prediction using predicted interresidue orientations
- (2020) Jianyi Yang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Abortive Infection: Bacterial Suicide as an Antiviral Immune Strategy
- (2020) Anna Lopatina et al. Annual Review of Virology
- Prokaryotic viperins produce diverse antiviral molecules
- (2020) Aude Bernheim et al. NATURE
- mMGE: a database for human metagenomic extrachromosomal mobile genetic elements
- (2020) Senying Lai et al. NUCLEIC ACIDS RESEARCH
- Diverse enzymatic activities mediate antiviral immunity in prokaryotes
- (2020) Linyi Gao et al. SCIENCE
- Diversity and classification of cyclic-oligonucleotide-based anti-phage signalling systems
- (2020) Adi Millman et al. Nature Microbiology
- Bacterial Retrons Function In Anti-Phage Defense
- (2020) Adi Millman et al. CELL
- Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems
- (2020) Mario Rodríguez Mestre et al. NUCLEIC ACIDS RESEARCH
- MMseqs2 desktop and local web server app for fast, interactive sequence searches
- (2019) M Mirdita et al. BIOINFORMATICS
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
- (2019) Jason Lloyd-Price et al. NATURE
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Multiple origins of reverse transcriptases linked to CRISPR-Cas systems
- (2019) Nicolás Toro et al. RNA Biology
- HH-suite3 for fast remote homology detection and deep protein annotation
- (2019) Martin Steinegger et al. BMC BIOINFORMATICS
- The EFI Web Resource for Genomic Enzymology Tools: Leveraging Protein, Genome, and Metagenome Databases to Discover Novel Enzymes and Metabolic Pathways
- (2019) Rémi Zallot et al. BIOCHEMISTRY
- Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire
- (2019) Eugene V. Koonin et al. NATURE REVIEWS GENETICS
- Database resources of the National Center for Biotechnology Information
- (2019) Eric W Sayers et al. NUCLEIC ACIDS RESEARCH
- DALI and the persistence of protein shape
- (2019) Liisa Holm PROTEIN SCIENCE
- Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life
- (2018) Cindy J. Castelle et al. CELL
- Biochemical properties of bacterial reverse transcriptase-related (rvt) gene products: multimerization, protein priming, and nucleotide preference
- (2018) Irina A. Yushenova et al. CURRENT GENETICS
- Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea
- (2018) Darius Kazlauskas et al. JOURNAL OF MOLECULAR BIOLOGY
- Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein
- (2018) Winston X. Yan et al. MOLECULAR CELL
- CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
- (2018) David Couvin et al. NUCLEIC ACIDS RESEARCH
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
- (2018) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- The first demonstration of the existence of reverse transcriptases in bacteria
- (2017) Masayori Inouye GENE
- ModelFinder: fast model selection for accurate phylogenetic estimates
- (2017) Subha Kalyaanamoorthy et al. NATURE METHODS
- Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions
- (2017) Zasha Weinberg et al. NUCLEIC ACIDS RESEARCH
- ECOD: new developments in the evolutionary classification of domains
- (2016) R. Dustin Schaeffer et al. NUCLEIC ACIDS RESEARCH
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
- (2016) Ana Laura Grazziotin et al. NUCLEIC ACIDS RESEARCH
- A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands
- (2016) Ikuo Uchiyama et al. PLoS One
- Deep transcriptome profiling of clinicalKlebsiella pneumoniaeisolates reveals strain and sequence type-specific adaptation
- (2015) Sebastian Bruchmann et al. ENVIRONMENTAL MICROBIOLOGY
- Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling
- (2015) A. Maxwell Burroughs et al. NUCLEIC ACIDS RESEARCH
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
- (2014) Simone Picelli et al. GENOME RESEARCH
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Comprehensive Phylogenetic Analysis of Bacterial Reverse Transcriptases
- (2014) Nicolás Toro et al. PLoS One
- CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems
- (2014) Kira S. Makarova et al. Frontiers in Genetics
- Infernal 1.1: 100-fold faster RNA homology searches
- (2013) E. P. Nawrocki et al. BIOINFORMATICS
- Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
- (2013) Vivek Anantharaman et al. Biology Direct
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes
- (2012) Kira S Makarova et al. Biology Direct
- Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems
- (2011) K. S. Makarova et al. JOURNAL OF BACTERIOLOGY
- A reverse transcriptase-related protein mediates phage resistance and polymerizes untemplated DNA in vitro
- (2011) Chen Wang et al. NUCLEIC ACIDS RESEARCH
- A widespread class of reverse transcriptase-related cellular genes
- (2011) E. A. Gladyshev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Systematic Survey for Novel Types of Prokaryotic Retroelements Based on Gene Neighborhood and Protein Architecture
- (2008) K. K. Kojima et al. MOLECULAR BIOLOGY AND EVOLUTION
- A diversity of uncharacterized reverse transcriptases in bacteria
- (2008) Dawn M. Simon et al. NUCLEIC ACIDS RESEARCH
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started