Bacterial Retrons Function In Anti-Phage Defense

A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair

(2020) Kaiying Cheng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The full-length structure of Thermus scotoductus OLD defines the ATP hydrolysis properties and catalytic mechanism of Class 1 OLD family nucleases

(2020) Carl J Schiltz et al.   NUCLEIC ACIDS RESEARCH

Abortive Infection: Bacterial Suicide as an Antiviral Immune Strategy

(2020) Anna Lopatina et al.   Annual Review of Virology

Peptide-based quorum sensing systems in Paenibacillus polymyxa

(2020) Maya Voichek et al.   Life Science Alliance

Cyclic GMP–AMP signalling protects bacteria against viral infection

(2019) Daniel Cohen et al.   NATURE

The pan-immune system of bacteria: antiviral defence as a community resource

(2019) Aude Bernheim et al.   NATURE REVIEWS MICROBIOLOGY

Retrons and their applications in genome engineering

(2019) Anna J Simon et al.   NUCLEIC ACIDS RESEARCH

Effector-triggered immunity and pathogen sensing in metazoans

(2019) Natasha Lopes Fischer et al.   Nature Microbiology

Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology

(2018) Alexander Harms et al.   MOLECULAR CELL

Systematic discovery of antiphage defense systems in the microbial pangenome

(2018) Shany Doron et al.   SCIENCE

Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing

(2018) Eilon Sharon et al.   CELL

OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Retroelement-based genome editing and evolution

(2018) Anna J. Simon et al.   ACS Synthetic Biology

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

(2017) Martin Steinegger et al.   NATURE BIOTECHNOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein

(2016) S. Silas et al.   SCIENCE

Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria

(2016) D. Dar et al.   SCIENCE

Structural basis for the inhibition of RecBCD by Gam and its synergistic antibacterial effect with quinolones

(2016) Martin Wilkinson et al.   eLife

CRISPR adaptation biases explain preference for acquisition of foreign DNA

(2015) Asaf Levy et al.   NATURE

Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens

(2015) Johanna R. Elfenbein et al.   PLoS Genetics

Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes

(2015) Michael Baym et al.   PLoS One

Genomically encoded analog memory with precise in vivo DNA writing in living cell populations

(2014) F. Farzadfard et al.   SCIENCE

Reversal of the Substrate Specificity of CMP N-Glycosidase to dCMP

(2013) Megan D. Sikowitz et al.   BIOCHEMISTRY

Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability

(2013) Louis-Marie Bobay et al.   PLoS Genetics

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems

(2011) K. S. Makarova et al.   JOURNAL OF BACTERIOLOGY

A reverse transcriptase-related protein mediates phage resistance and polymerizes untemplated DNA in vitro

(2011) Chen Wang et al.   NUCLEIC ACIDS RESEARCH

BglBrick vectors and datasheets: A synthetic biology platform for gene expression

(2011) Taek Lee et al.   Journal of Biological Engineering

A novel nucleotide kinase encoded by gene 1.7 of bacteriophage T7

(2010) Ngoc Q. Tran et al.   MOLECULAR MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

RecBCD Enzyme and the Repair of Double-Stranded DNA Breaks

(2008) M. S. Dillingham et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

WAR: Webserver for aligning structural RNAs

(2008) E. Torarinsson et al.   NUCLEIC ACIDS RESEARCH

A diversity of uncharacterized reverse transcriptases in bacteria

(2008) Dawn M. Simon et al.   NUCLEIC ACIDS RESEARCH